Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HUF98_RS01650 Genome accession   NZ_CP054560
Coordinates   350724..351197 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345724..356197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS01625 (HUF98_01625) - 346187..348292 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  HUF98_RS01630 (HUF98_01630) - 348332..348462 (-) 131 Protein_312 hypothetical protein -
  HUF98_RS01635 (HUF98_01635) rpoZ 348501..348779 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HUF98_RS01640 (HUF98_01640) gmk 348852..349481 (-) 630 WP_000015937.1 guanylate kinase -
  HUF98_RS01645 (HUF98_01645) ispH 349604..350554 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HUF98_RS01650 (HUF98_01650) fimU 350724..351197 (+) 474 WP_001214065.1 pilus assembly FimT family protein Machinery gene
  HUF98_RS01655 (HUF98_01655) pilV 351191..351751 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HUF98_RS01660 (HUF98_01660) pilW 351752..352753 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  HUF98_RS01665 (HUF98_01665) pilX 352750..353568 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=453288 HUF98_RS01650 WP_001214065.1 350724..351197(+) (fimU) [Acinetobacter baumannii strain YC103]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=453288 HUF98_RS01650 WP_001214065.1 350724..351197(+) (fimU) [Acinetobacter baumannii strain YC103]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1