Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MS088_RS24155 Genome accession   NZ_CP054472
Coordinates   5213271..5214608 (+) Length   445 a.a.
NCBI ID   WP_174538490.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAAK088     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5208271..5219608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS088_RS24130 (MS088_24130) pgeF 5208360..5209142 (-) 783 WP_174538489.1 peptidoglycan editing factor PgeF -
  MS088_RS24135 (MS088_24135) rluD 5209139..5210101 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MS088_RS24140 (MS088_24140) - 5210247..5211272 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  MS088_RS24145 (MS088_24145) - 5211429..5211674 (+) 246 WP_023115580.1 PP0621 family protein -
  MS088_RS24150 (MS088_24150) pilS 5211664..5213256 (+) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  MS088_RS24155 (MS088_24155) pilR 5213271..5214608 (+) 1338 WP_174538490.1 two-component system response regulator PilR Regulator
  MS088_RS24160 (MS088_24160) thiO 5214654..5215748 (-) 1095 WP_023103512.1 glycine oxidase ThiO -
  MS088_RS24165 (MS088_24165) - 5215888..5216388 (+) 501 WP_003116259.1 GspH/FimT family pseudopilin -
  MS088_RS24170 (MS088_24170) - 5216511..5216999 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  MS088_RS24175 (MS088_24175) pilV 5217009..5217533 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  MS088_RS24180 (MS088_24180) - 5217542..5218357 (+) 816 WP_003116262.1 PilW family protein -
  MS088_RS24185 (MS088_24185) - 5218354..5218959 (+) 606 WP_003116263.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49753.06 Da        Isoelectric Point: 5.6368

>NTDB_id=452691 MS088_RS24155 WP_174538490.1 5213271..5214608(+) (pilR) [Pseudomonas aeruginosa strain PAAK088]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLWAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=452691 MS088_RS24155 WP_174538490.1 5213271..5214608(+) (pilR) [Pseudomonas aeruginosa strain PAAK088]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCTGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGATATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.551

100

0.996
  pilR Acinetobacter baumannii strain A118

50.98

100

0.526
  luxO Vibrio cholerae strain A1552

37.946

100

0.382