Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HTZ78_RS16930 Genome accession   NZ_CP054306
Coordinates   3626022..3626387 (+) Length   121 a.a.
NCBI ID   WP_190596709.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3621022..3631387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS16915 (HTZ78_16910) cobT 3621361..3622470 (-) 1110 WP_212717702.1 nicotinate mononucleotide-dependent phosphoribosyltransferase CobT -
  HTZ78_RS16920 (HTZ78_16915) - 3622594..3624504 (+) 1911 WP_212717704.1 AMP-binding protein -
  HTZ78_RS16925 (HTZ78_16920) - 3624647..3625813 (+) 1167 WP_212717706.1 response regulator -
  HTZ78_RS16930 (HTZ78_16925) pilH 3626022..3626387 (+) 366 WP_190596709.1 response regulator transcription factor Machinery gene
  HTZ78_RS16935 (HTZ78_16930) - 3626447..3626998 (+) 552 WP_212717708.1 chemotaxis protein CheW -
  HTZ78_RS16940 (HTZ78_16935) pilJ 3627069..3629684 (+) 2616 WP_212717710.1 methyl-accepting chemotaxis protein Machinery gene
  HTZ78_RS16945 (HTZ78_16940) - 3629775..3630566 (+) 792 WP_194016605.1 ABC transporter permease -
  HTZ78_RS16950 (HTZ78_16945) - 3630684..3630935 (+) 252 WP_190596692.1 TatA/E family twin arginine-targeting protein translocase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13647.88 Da        Isoelectric Point: 5.8739

>NTDB_id=451981 HTZ78_RS16930 WP_190596709.1 3626022..3626387(+) (pilH) [Synechocystis sp. PCC 7338]
MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQSFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIM
CSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLRN

Nucleotide


Download         Length: 366 bp        

>NTDB_id=451981 HTZ78_RS16930 WP_190596709.1 3626022..3626387(+) (pilH) [Synechocystis sp. PCC 7338]
ATGAACGCAGTTTTGCTGGTTGAAGACAGCTCTAGTCAGCGCGAGATGATATCTGGCATCCTCAAAGACCATGGCTGGCA
GGTCACCATCGCCTGTGATGGGGTAGAGGCCTTGGAAAAATTGCAGAGTTTTAGTCCGGACCTGGTGGTGCTGGATATTG
TTATGCCCCGCATGAACGGCTATGAGGTTTGTCGGCGCATCAAATCCGATCCGAAAACAAAAAATGTGCCGGTGATTATG
TGTTCCTCTAAGGGGGAGGAATTTGATCGTTTTTGGGGCATGCGTCAGGGGGCCGACGCCTATATCGCCAAACCCTTTCA
GCCGATGGAATTGGTGGGTACCATTAAACAACTCCTGCGCAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

99.174

100

0.992
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

38.333

99.174

0.38
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372