Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   HTZ78_RS16940 Genome accession   NZ_CP054306
Coordinates   3627069..3629684 (+) Length   871 a.a.
NCBI ID   WP_212717710.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3622069..3634684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS16920 (HTZ78_16915) - 3622594..3624504 (+) 1911 WP_212717704.1 AMP-binding protein -
  HTZ78_RS16925 (HTZ78_16920) - 3624647..3625813 (+) 1167 WP_212717706.1 response regulator -
  HTZ78_RS16930 (HTZ78_16925) pilH 3626022..3626387 (+) 366 WP_190596709.1 response regulator transcription factor Machinery gene
  HTZ78_RS16935 (HTZ78_16930) - 3626447..3626998 (+) 552 WP_212717708.1 chemotaxis protein CheW -
  HTZ78_RS16940 (HTZ78_16935) pilJ 3627069..3629684 (+) 2616 WP_212717710.1 methyl-accepting chemotaxis protein Machinery gene
  HTZ78_RS16945 (HTZ78_16940) - 3629775..3630566 (+) 792 WP_194016605.1 ABC transporter permease -
  HTZ78_RS16950 (HTZ78_16945) - 3630684..3630935 (+) 252 WP_190596692.1 TatA/E family twin arginine-targeting protein translocase -
  HTZ78_RS16955 (HTZ78_16950) - 3631252..3632646 (+) 1395 WP_212717720.1 sensor domain-containing diguanylate cyclase -
  HTZ78_RS16960 (HTZ78_16955) - 3632708..3632875 (+) 168 WP_212717722.1 hypothetical protein -

Sequence

Protein


Download         Length: 871 a.a.        Molecular weight: 93159.62 Da        Isoelectric Point: 4.0313

>NTDB_id=451982 HTZ78_RS16940 WP_212717710.1 3627069..3629684(+) (pilJ) [Synechocystis sp. PCC 7338]
MATETNFSQLYGLAYAAYGQGNYQEASSHIEQLAADFPEDPNVLLLRGHIYVGLEQYALAHQAYQGVIRLSDRQDLIDCA
HQALGQIQEEGTGGNGAKDSFGQDWQSEVDSVDRSMAWETGIFTEDDFGEPTLGSVPTPTNPGMDHPFGRNSGSGSFSTS
GARSYEIENLDWSPEAFTDDLDSDDEQTMMPQTGESTFVVPPAFGEGIADFADLAADVSAAGIGGTEGTEHPQYQAWDGG
DWSEALGLDDPEALSAAPTPTSGNYGGGNNLPSFDAFEEGVDDELSDFNLTDIAPELPDSSLFTQTTGLDMGTVDRVDDT
QGGDAVAHGGNAPPPGMATWLKPEGAATGDLSSATSPFNDRPTSEVDAGFLGWFTNASLFKKQIYMAISSGVFSGFAVLV
LGSIVGLGGTPQDVPAPSGETTTEAPAEGAPAEGQAPSQTPEEEPGKPSLLNLALLTAIATAIGVFLINRLLMQQIKSII
DDLQNQFESIYEGNFNVRAKVRSEDELGALTQRFNYISQVILTATSEAQERAATTEKVREKLQRQVIRLLDDVEGASRGD
LTVQAEVTADELGAVADAFNLTIQNLREIVLQVKNAAKQVNNNCKDSESFARNNSSDALRMAEELAVTLNSVQLMTESIE
RVAENAREAEEVAHTSSLTALKGGEAVERTVGGILQIRETVSETARKVKRLAEASQEISKIVAVISQIASRTNLLALNAS
IQAARAGEAGRGFAIVADEVRQLADRSAKSLKEIEQIVLQIQSETGSVMTAMEEGIQQVIDVTDKSEQSKRALEDIIEVS
NRINTLVRSITADTVKQQENSGAVSNVMQSIELTAQETSQESQRVAGSLQTLVSISRDLLTSVERFRVESR

Nucleotide


Download         Length: 2616 bp        

>NTDB_id=451982 HTZ78_RS16940 WP_212717710.1 3627069..3629684(+) (pilJ) [Synechocystis sp. PCC 7338]
ATGGCAACAGAAACCAATTTTTCGCAGCTTTATGGGTTGGCCTACGCCGCCTATGGACAGGGGAATTATCAAGAAGCTTC
TTCCCACATTGAACAATTGGCCGCTGATTTTCCTGAAGATCCCAATGTGCTATTGCTCCGGGGACACATCTATGTCGGCC
TGGAACAATACGCCCTAGCCCACCAAGCTTATCAGGGGGTAATCCGGCTTTCCGATCGCCAAGATTTAATCGACTGTGCT
CACCAGGCCCTGGGGCAAATCCAAGAGGAGGGAACGGGGGGCAACGGAGCGAAAGACTCCTTTGGCCAGGATTGGCAAAG
TGAGGTTGATTCTGTTGACCGTTCCATGGCCTGGGAAACGGGAATATTTACGGAGGATGATTTTGGTGAGCCCACCTTGG
GTAGCGTACCTACCCCCACCAATCCGGGCATGGATCATCCCTTTGGCCGTAACTCTGGATCCGGTTCCTTTAGCACCAGT
GGGGCCAGGAGTTACGAAATTGAAAATCTAGATTGGAGTCCAGAAGCTTTTACCGATGATCTGGACTCGGACGATGAACA
GACCATGATGCCCCAAACTGGTGAATCTACCTTTGTGGTACCTCCGGCTTTCGGTGAAGGGATAGCGGACTTTGCTGATT
TGGCGGCGGATGTCTCAGCGGCGGGTATTGGCGGGACAGAGGGCACCGAACATCCCCAATATCAAGCTTGGGATGGGGGC
GACTGGAGTGAAGCCCTAGGTTTAGACGATCCGGAAGCCCTATCTGCCGCTCCTACCCCCACTTCTGGCAATTACGGCGG
TGGCAACAACTTGCCGAGTTTTGATGCGTTTGAGGAAGGGGTTGACGATGAGTTGTCCGATTTTAACTTGACAGACATTG
CCCCGGAGTTGCCCGATTCTTCCCTCTTTACCCAAACCACCGGTCTGGATATGGGCACTGTGGACCGGGTCGATGACACC
CAAGGCGGTGATGCGGTGGCCCATGGAGGTAATGCCCCACCACCGGGTATGGCTACTTGGCTAAAACCAGAGGGTGCCGC
CACCGGGGATTTATCCAGCGCCACTAGTCCCTTTAATGACCGCCCCACCAGTGAAGTAGATGCGGGTTTTCTCGGTTGGT
TCACCAATGCTTCCCTGTTTAAAAAGCAAATTTACATGGCGATCTCCTCCGGTGTATTTTCCGGGTTCGCTGTGTTGGTA
TTAGGAAGCATAGTGGGCCTGGGGGGAACTCCCCAAGACGTACCTGCTCCTTCAGGGGAAACCACCACCGAAGCTCCGGC
AGAAGGTGCCCCCGCAGAGGGTCAGGCCCCTTCCCAGACCCCAGAGGAAGAACCGGGCAAACCATCCCTCCTCAACCTCG
CCCTCCTCACAGCCATAGCCACGGCGATTGGGGTCTTTTTGATCAATCGACTCCTGATGCAACAGATTAAAAGTATTATC
GACGACCTACAAAATCAGTTTGAATCCATCTACGAAGGCAATTTCAATGTCCGGGCCAAGGTGCGATCAGAGGACGAATT
GGGGGCTTTGACCCAGCGGTTTAACTATATTTCCCAGGTTATTCTCACTGCCACCAGTGAAGCCCAGGAACGGGCTGCCA
CCACCGAAAAAGTGCGGGAGAAGTTGCAACGCCAAGTAATTCGGCTTCTGGACGATGTGGAGGGGGCTTCCCGGGGAGAT
TTGACCGTACAAGCGGAAGTAACCGCGGATGAGTTGGGGGCGGTGGCCGATGCCTTTAACCTGACTATCCAAAATTTGCG
GGAAATTGTCTTGCAGGTAAAAAATGCTGCCAAGCAGGTGAACAATAACTGTAAAGACAGTGAGTCCTTTGCTCGCAATA
ACTCCAGCGATGCCCTACGGATGGCGGAGGAATTGGCTGTCACCCTTAACTCCGTTCAGTTAATGACGGAATCCATTGAA
CGGGTGGCAGAAAACGCCCGGGAAGCGGAGGAAGTGGCCCATACTTCATCTTTAACGGCCCTCAAAGGTGGGGAAGCAGT
GGAAAGAACGGTGGGGGGCATCCTACAAATTCGGGAAACGGTATCGGAAACCGCCCGCAAGGTAAAACGGCTAGCGGAAG
CATCCCAGGAAATTTCCAAAATTGTGGCAGTTATTTCCCAAATTGCCTCCCGGACTAACCTGCTAGCTTTGAACGCTTCC
ATTCAGGCGGCCCGGGCAGGGGAAGCAGGGCGGGGCTTTGCTATCGTTGCAGACGAGGTGCGGCAGTTGGCAGATCGTTC
TGCTAAGTCGTTGAAGGAAATTGAGCAGATCGTTTTGCAGATCCAGAGTGAAACCGGCTCCGTAATGACTGCCATGGAAG
AGGGTATACAACAAGTAATCGACGTGACTGACAAATCGGAACAGTCTAAACGAGCCCTGGAGGATATTATTGAGGTGTCT
AACCGGATTAACACTTTAGTGCGTTCCATTACCGCCGACACCGTCAAACAACAGGAGAATTCCGGGGCAGTGTCCAACGT
CATGCAGTCCATTGAGCTGACCGCCCAAGAAACGTCCCAGGAATCCCAACGGGTGGCAGGATCTTTGCAAACCCTGGTCT
CCATTTCCCGAGATCTGTTAACCTCTGTGGAACGGTTCCGGGTGGAAAGTCGATGA

Domains

Predicted by InterproScan.

HAMP domain (HAMP)

(557-588)

HAMP domain (HAMP)

(475-516)

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(651-832)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

94.489

100

0.945