Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I9X29_RS29430 Genome accession   NZ_CP065867
Coordinates   6349001..6350494 (+) Length   497 a.a.
NCBI ID   WP_023107398.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TJ2014-049     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6344001..6355494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9X29_RS29400 (I9X29_29400) - 6344065..6344979 (-) 915 WP_023127067.1 fimbrial protein -
  I9X29_RS29405 (I9X29_29405) sutA 6345473..6345790 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  I9X29_RS29410 (I9X29_29410) - 6345868..6346293 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I9X29_RS29415 (I9X29_29415) - 6346554..6347882 (-) 1329 WP_057388078.1 ammonium transporter -
  I9X29_RS29420 (I9X29_29420) glnK 6347922..6348260 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  I9X29_RS29425 (I9X29_29425) - 6348700..6348960 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  I9X29_RS29430 (I9X29_29430) comM 6349001..6350494 (+) 1494 WP_023107398.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I9X29_RS29435 (I9X29_29435) betT 6350619..6352604 (+) 1986 WP_003163073.1 choline BCCT transporter BetT -
  I9X29_RS29440 (I9X29_29440) pchP 6352647..6353696 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  I9X29_RS29445 (I9X29_29445) - 6353847..6354764 (-) 918 WP_004352313.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53068.99 Da        Isoelectric Point: 7.9587

>NTDB_id=451969 I9X29_RS29430 WP_023107398.1 6349001..6350494(+) (comM) [Pseudomonas aeruginosa strain TJ2014-049]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=451969 I9X29_RS29430 WP_023107398.1 6349001..6350494(+) (comM) [Pseudomonas aeruginosa strain TJ2014-049]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
TGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCAGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAACGACCGTTCCG
CCAACCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTACTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.653

99.799

0.565
  comM Haemophilus influenzae Rd KW20

55.666

100

0.563
  comM Vibrio cholerae O1 biovar El Tor strain E7946

56.25

99.799

0.561
  comM Vibrio cholerae strain A1552

56.25

99.799

0.561
  comM Glaesserella parasuis strain SC1401

54.691

100

0.551
  comM Acinetobacter baylyi ADP1

53.614

100

0.537
  comM Legionella pneumophila str. Paris

49.703

100

0.505
  comM Legionella pneumophila strain ERS1305867

49.703

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.957

100

0.469
  comM Helicobacter pylori 26695

39.044

100

0.394