Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   I9X27_RS16710 Genome accession   NZ_CP065866
Coordinates   3650751..3651392 (-) Length   213 a.a.
NCBI ID   WP_124157151.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TJ2019-017     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645751..3656392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9X27_RS16695 (I9X27_16695) hupB 3646430..3646702 (-) 273 WP_003087931.1 nucleoid-associated protein HU-beta -
  I9X27_RS16700 (I9X27_16700) lon 3646838..3649234 (-) 2397 WP_003087926.1 endopeptidase La -
  I9X27_RS16705 (I9X27_16705) clpX 3649366..3650646 (-) 1281 WP_003087924.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I9X27_RS16710 (I9X27_16710) clpP 3650751..3651392 (-) 642 WP_124157151.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  I9X27_RS16715 (I9X27_16715) tig 3651486..3652796 (-) 1311 WP_003087920.1 trigger factor -
  I9X27_RS16720 (I9X27_16720) parR 3653028..3653735 (+) 708 WP_003098126.1 response regulator transcription factor ParR -
  I9X27_RS16725 (I9X27_16725) parS 3653736..3655022 (+) 1287 WP_003087912.1 sensor histidine kinase ParS -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23516.17 Da        Isoelectric Point: 6.3772

>NTDB_id=451828 I9X27_RS16710 WP_124157151.1 3650751..3651392(-) (clpP) [Pseudomonas aeruginosa strain TJ2019-017]
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL
FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKIMTQRDLAV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=451828 I9X27_RS16710 WP_124157151.1 3650751..3651392(-) (clpP) [Pseudomonas aeruginosa strain TJ2019-017]
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC
CGCCCGCGGCGAGCGAGCCTACGACATCTATTCGCGCCTGCTGAAGGAACGGATCATCTTCCTGGTCGGCCAGGTCGAGG
ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC
AACTCGCCGGGTGGTTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC
CTGTATCGGCCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT
CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC
TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTTATTGCCCGCGATACCGATCG
TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGATCATGACCCAGCGCGACCTGGCCGTCT
AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.229

90.141

0.615
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.263

89.202

0.582
  clpP Lactococcus lactis subsp. cremoris KW2

53.807

92.488

0.498
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.284

92.488

0.484
  clpP Streptococcus pneumoniae D39

51.282

91.549

0.469
  clpP Streptococcus pneumoniae R6

51.282

91.549

0.469
  clpP Streptococcus pneumoniae TIGR4

51.282

91.549

0.469
  clpP Streptococcus pyogenes JRS4

51.282

91.549

0.469
  clpP Streptococcus pyogenes MGAS315

51.282

91.549

0.469
  clpP Streptococcus thermophilus LMG 18311

51.282

91.549

0.469
  clpP Streptococcus thermophilus LMD-9

51.282

91.549

0.469
  clpP Streptococcus pneumoniae Rx1

51.282

91.549

0.469
  clpP Streptococcus mutans UA159

51.02

92.019

0.469