Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   HRE60_RS06885 Genome accession   NZ_CP054153
Coordinates   1564157..1566127 (-) Length   656 a.a.
NCBI ID   WP_181670560.1    Uniprot ID   A0A7L6WM84
Organism   Streptococcus salivarius strain DB-B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559157..1571127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS06865 (HRE60_06865) amiF 1559660..1560589 (-) 930 WP_181670557.1 ATP-binding cassette domain-containing protein Regulator
  HRE60_RS06870 (HRE60_06870) amiE 1560582..1561667 (-) 1086 WP_181670558.1 ABC transporter ATP-binding protein Regulator
  HRE60_RS06875 (HRE60_06875) amiD 1561677..1562603 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  HRE60_RS06880 (HRE60_06880) amiC 1562603..1564096 (-) 1494 WP_181670559.1 ABC transporter permease Regulator
  HRE60_RS06885 (HRE60_06885) amiA 1564157..1566127 (-) 1971 WP_181670560.1 peptide ABC transporter substrate-binding protein Regulator
  HRE60_RS06890 (HRE60_06890) amiA 1566308..1568278 (-) 1971 WP_181670561.1 peptide ABC transporter substrate-binding protein Regulator
  HRE60_RS06895 (HRE60_06895) pta 1568515..1569498 (-) 984 WP_181670562.1 phosphate acetyltransferase -
  HRE60_RS06900 (HRE60_06900) - 1569512..1570408 (-) 897 WP_013990221.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72949.34 Da        Isoelectric Point: 5.2837

>NTDB_id=451179 HRE60_RS06885 WP_181670560.1 1564157..1566127(-) (amiA) [Streptococcus salivarius strain DB-B5]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYIYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNILVKPDFVYAGDKSFGDLVTEKMPSYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=451179 HRE60_RS06885 WP_181670560.1 1564157..1566127(-) (amiA) [Streptococcus salivarius strain DB-B5]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTTCTAAGTGTTGGGGTTTTAGTGGCTTGCTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATATTTATACTGCTGATCCTGAGACATTGGATTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAAGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACTGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCTTACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAATTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTACGATGCTTCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGCCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAAAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTGAAAAAGGTGCAGCACTTGCTGTTCGTAACATTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGCCTTCATATGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAAGCTAAGGAAGCTCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTCGGTAAAGAAAATGTGGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCGCCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTCGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTAAACAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCCTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTCGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCTCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6WM84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.152

100

0.752
  amiA3 Streptococcus thermophilus LMG 18311

74.886

100

0.75
  amiA3 Streptococcus thermophilus LMD-9

74.886

100

0.75