Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   HRE60_RS06890 Genome accession   NZ_CP054153
Coordinates   1566308..1568278 (-) Length   656 a.a.
NCBI ID   WP_181670561.1    Uniprot ID   A0A7L6WLR1
Organism   Streptococcus salivarius strain DB-B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561308..1573278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS06875 (HRE60_06875) amiD 1561677..1562603 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  HRE60_RS06880 (HRE60_06880) amiC 1562603..1564096 (-) 1494 WP_181670559.1 ABC transporter permease Regulator
  HRE60_RS06885 (HRE60_06885) amiA 1564157..1566127 (-) 1971 WP_181670560.1 peptide ABC transporter substrate-binding protein Regulator
  HRE60_RS06890 (HRE60_06890) amiA 1566308..1568278 (-) 1971 WP_181670561.1 peptide ABC transporter substrate-binding protein Regulator
  HRE60_RS06895 (HRE60_06895) pta 1568515..1569498 (-) 984 WP_181670562.1 phosphate acetyltransferase -
  HRE60_RS06900 (HRE60_06900) - 1569512..1570408 (-) 897 WP_013990221.1 RluA family pseudouridine synthase -
  HRE60_RS06905 (HRE60_06905) - 1570405..1571241 (-) 837 WP_002884507.1 NAD kinase -
  HRE60_RS06910 (HRE60_06910) - 1571213..1571887 (-) 675 WP_181670563.1 GTP pyrophosphokinase family protein -
  HRE60_RS06915 (HRE60_06915) - 1571983..1572558 (+) 576 WP_022496737.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71942.75 Da        Isoelectric Point: 4.9178

>NTDB_id=451180 HRE60_RS06890 WP_181670561.1 1566308..1568278(-) (amiA) [Streptococcus salivarius strain DB-B5]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYVYNSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADGKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEALERGFTDGAYSLARVYPTSSNYASVEKKYKDNIYYTAAGASTSAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQMNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
TDGQDGLYNAEKAKTEFAKAKESLQGEGVQFPIHLDLPVDQSSKIHVAQAQSLKQTIEQSLGSDNVVIDVNQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=451180 HRE60_RS06890 WP_181670561.1 1566308..1568278(-) (amiA) [Streptococcus salivarius strain DB-B5]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGATCCTGAAACTTTAGACTATATCACGTCAAATACTGGAC
CTACTAAGACTGCTGTAACTAACGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTTCCTTCAGTAGCT
GAAGATTGGTCTGTTTCTCAAGACGGTCTTACTTATACCTATAAAATCCGTAAGGGTGTTAAATGGTATACTTCTGATGG
CGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAGGCTGGAGCTCTTT
ACTTGGTGCAAGATTCTATTGCTGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGCGTTAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCTGAGCCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCCTTCTCAAATCTTTGACAGCTAAATCATCAATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAG
AATGTACACTTTGATGCCATCAAATTGTCATATTATGACGGTTCGGATCAAGAGGCTCTAGAACGTGGTTTCACGGATGG
TGCCTATAGTTTGGCTCGTGTCTACCCAACAAGTTCTAACTATGCTTCTGTAGAGAAGAAATATAAAGACAATATTTATT
ACACTGCAGCAGGTGCGTCTACATCAGCCATTGGTGTTAATATCGACCGCCAAAGCTATAAATTCTCAGCCAAGAAGACG
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCAATTGATCGTAC
GGCTTATCAATCACAAATGAATGGTAAAGATGGTGCAGCTCTAGCTCTTCGTAATCTTTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGAGATCTTGTAACAGAGAAAATGTCCTCTTATGGTGATGAATGGTCAGGTGTAAACTTT
ACTGATGGTCAAGATGGCCTCTACAATGCGGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAATCTCTTCAAGGTGA
AGGTGTTCAATTCCCAATTCACTTAGACCTTCCTGTTGACCAAAGTTCTAAAATCCATGTTGCTCAGGCTCAATCTTTGA
AACAAACGATTGAACAATCATTGGGTAGCGATAATGTGGTTATCGATGTTAACCAATTGTCATCAGATGATATGCAAAAT
GCAACCCTTAATGCGGCAAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCTCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGCTATGCCCAAGCTCAAGCATGGTTGGAAGATAGCTCGCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6WLR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

98.476

100

0.985
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904