Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   HRE60_RS06875 Genome accession   NZ_CP054153
Coordinates   1561677..1562603 (-) Length   308 a.a.
NCBI ID   WP_002884564.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556677..1567603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS06845 (HRE60_06845) - 1556756..1557550 (-) 795 WP_181670555.1 HAD family hydrolase -
  HRE60_RS06850 (HRE60_06850) - 1557732..1558109 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  HRE60_RS06855 (HRE60_06855) - 1558114..1558812 (+) 699 WP_084869724.1 ABC transporter ATP-binding protein -
  HRE60_RS06860 (HRE60_06860) - 1558824..1559609 (+) 786 WP_181670556.1 ABC transporter permease -
  HRE60_RS06865 (HRE60_06865) amiF 1559660..1560589 (-) 930 WP_181670557.1 ATP-binding cassette domain-containing protein Regulator
  HRE60_RS06870 (HRE60_06870) amiE 1560582..1561667 (-) 1086 WP_181670558.1 ABC transporter ATP-binding protein Regulator
  HRE60_RS06875 (HRE60_06875) amiD 1561677..1562603 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  HRE60_RS06880 (HRE60_06880) amiC 1562603..1564096 (-) 1494 WP_181670559.1 ABC transporter permease Regulator
  HRE60_RS06885 (HRE60_06885) amiA 1564157..1566127 (-) 1971 WP_181670560.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34609.70 Da        Isoelectric Point: 9.7054

>NTDB_id=451177 HRE60_RS06875 WP_002884564.1 1561677..1562603(-) (amiD) [Streptococcus salivarius strain DB-B5]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVAIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=451177 HRE60_RS06875 WP_002884564.1 1561677..1562603(-) (amiD) [Streptococcus salivarius strain DB-B5]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCAGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTCATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTGCGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGCTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAACATTCCTGCCCTCCTTGTCGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAACATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACTTTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTATCAGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCTTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.701

100

0.987
  amiD Streptococcus thermophilus LMG 18311

96.104

100

0.961
  amiD Streptococcus thermophilus LMD-9

96.104

100

0.961