Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   HRE60_RS06865 Genome accession   NZ_CP054153
Coordinates   1559660..1560589 (-) Length   309 a.a.
NCBI ID   WP_181670557.1    Uniprot ID   A0A7L6WN95
Organism   Streptococcus salivarius strain DB-B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554660..1565589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS06840 (HRE60_06840) - 1555945..1556763 (-) 819 WP_073687880.1 Cof-type HAD-IIB family hydrolase -
  HRE60_RS06845 (HRE60_06845) - 1556756..1557550 (-) 795 WP_181670555.1 HAD family hydrolase -
  HRE60_RS06850 (HRE60_06850) - 1557732..1558109 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  HRE60_RS06855 (HRE60_06855) - 1558114..1558812 (+) 699 WP_084869724.1 ABC transporter ATP-binding protein -
  HRE60_RS06860 (HRE60_06860) - 1558824..1559609 (+) 786 WP_181670556.1 ABC transporter permease -
  HRE60_RS06865 (HRE60_06865) amiF 1559660..1560589 (-) 930 WP_181670557.1 ATP-binding cassette domain-containing protein Regulator
  HRE60_RS06870 (HRE60_06870) amiE 1560582..1561667 (-) 1086 WP_181670558.1 ABC transporter ATP-binding protein Regulator
  HRE60_RS06875 (HRE60_06875) amiD 1561677..1562603 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  HRE60_RS06880 (HRE60_06880) amiC 1562603..1564096 (-) 1494 WP_181670559.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35047.10 Da        Isoelectric Point: 6.5822

>NTDB_id=451175 HRE60_RS06865 WP_181670557.1 1559660..1560589(-) (amiF) [Streptococcus salivarius strain DB-B5]
MPEKLVEVKDVEISFGEGNKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVELRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=451175 HRE60_RS06865 WP_181670557.1 1559660..1560589(-) (amiF) [Streptococcus salivarius strain DB-B5]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAATAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATCGGTCGCG
CCATTATTGGTCTAAATGATACTAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGTCACCTATCTCACTCT
GAGAAAAATGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCCAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAACACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCACGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACATGACTATTCTGTTGATAAACCAGAAATGGTTGAACTACGTCCAGGACACTTCGTTT
GGGGTAACAAAGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6WN95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.029

100

0.99
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977