Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   STMM8_RS05560 Genome accession   NZ_CP065787
Coordinates   1054704..1056374 (-) Length   556 a.a.
NCBI ID   WP_002953185.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049704..1061374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM8_RS05525 (STMM8_05545) - 1049747..1050439 (-) 693 WP_011226119.1 phosphoglycerate mutase -
  STMM8_RS05530 (STMM8_05550) - 1050694..1051632 (+) 939 WP_002950994.1 dihydroorotate oxidase -
  STMM8_RS05535 (STMM8_05555) - 1051697..1051897 (-) 201 WP_022096741.1 hypothetical protein -
  STMM8_RS05540 (STMM8_05560) - 1051955..1052230 (-) 276 WP_002950996.1 HU family DNA-binding protein -
  STMM8_RS05545 (STMM8_05565) - 1052367..1052936 (-) 570 WP_011226122.1 YpmS family protein -
  STMM8_RS05550 (STMM8_05570) - 1052929..1053804 (-) 876 WP_022096740.1 SGNH/GDSL hydrolase family protein -
  STMM8_RS05555 (STMM8_05575) - 1053797..1054633 (-) 837 WP_022096739.1 DegV family protein -
  STMM8_RS05560 (STMM8_05580) recN 1054704..1056374 (-) 1671 WP_002953185.1 DNA repair protein RecN Machinery gene
  STMM8_RS05565 (STMM8_05585) - 1056383..1056829 (-) 447 WP_011226126.1 arginine repressor -
  STMM8_RS05570 (STMM8_05590) - 1056777..1057643 (-) 867 WP_011226127.1 TlyA family RNA methyltransferase -
  STMM8_RS05575 (STMM8_05595) - 1057636..1058508 (-) 873 WP_022096738.1 polyprenyl synthetase family protein -
  STMM8_RS05580 (STMM8_05600) - 1058508..1058723 (-) 216 WP_002951008.1 exodeoxyribonuclease VII small subunit -
  STMM8_RS05585 (STMM8_05605) xseA 1058701..1060041 (-) 1341 WP_011227294.1 exodeoxyribonuclease VII large subunit -
  STMM8_RS05590 (STMM8_05610) - 1060230..1060475 (-) 246 WP_022096737.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62473.63 Da        Isoelectric Point: 4.5240

>NTDB_id=451175 STMM8_RS05560 WP_002953185.1 1054704..1056374(-) (recN) [Streptococcus thermophilus strain MM8]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSAPKAEIQGFFSIEQNPALVSLL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTILKAVGNFLVDIHGQHDQEELMRPALHISMLDAFGDKDFFQAKKE
YQEYFDRYRELRKAVLEKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEAYYVLEDVTKQLGDLVDNLDFDAGRLQEIEYRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQRERHQIANALESEIKTELCDLYMDKADFKVVFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVEEIAKMLAGDNLTDAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=451175 STMM8_RS05560 WP_002953185.1 1054704..1056374(-) (recN) [Streptococcus thermophilus strain MM8]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAAATTTCTCTTAACTTTGAAAATGGGATGACTGTTCT
TACCGGAGAGACTGGGGCAGGAAAATCCATTATCATTGATGCCATGAATCTTATGTTGGGGGCACGGGCATCTAGCGAGG
TTGTCCGTCATTCAGCCCCCAAGGCGGAGATTCAGGGCTTCTTTTCAATTGAACAAAATCCTGCTTTAGTTAGTCTCTTG
GAAGACAATGGGATTCCTGTTGAAGATGAGTTAATTATCCGCCGTGAAATTTTCCAAAATGGTCGAAGTGTTAGCCGTAT
CAACGGTCAAATGGTCAATTTAACGATTCTTAAAGCTGTCGGCAACTTTTTGGTAGATATCCATGGACAGCATGACCAAG
AAGAACTTATGAGACCTGCTCTTCACATAAGCATGCTTGATGCCTTTGGTGACAAGGATTTTTTTCAGGCAAAAAAAGAA
TATCAGGAATACTTTGATCGTTACCGTGAGCTAAGAAAAGCTGTTCTTGAAAAACAGAAAAACGAGAAAGAGCATAAGGC
TAGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGCCTCTCTAAAAACAGGTGAGGATCTAGCTTTGATGA
AGGAGCGAGATAAACTCCTCAATCATAAGCAGATTGCTGATACCTTAACGAATGCTTATGTTATGCTGGATAATGAAGAT
TTTTCAAGCTTATCAAATGTCCGTTCTGCCATGAATGATCTCCAATCTCTTGAAGAGTATGATTCTGATTATAAAGAACT
CTCTAATAATTTGTCAGAAGCCTACTATGTCCTTGAGGATGTCACTAAACAGTTAGGAGATCTTGTAGATAATTTAGATT
TTGATGCTGGTCGTTTGCAAGAGATTGAATACCGTTTAGATACGATTAATGCCATTACTCGTAAATATGGTGGAACTGTT
GATGATGTCTTAGATTATCTCGAAAATTCAAGTAAAGAATATAACCTATTGACTGGAAATTCTAGCTCTTCTGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACTTACTCGCGTCTGCAGAAACCTTGCAAAGGGAACGACATCAGATTGCAA
ACGCTCTTGAGTCAGAGATAAAGACTGAGTTATGTGATTTGTATATGGATAAGGCTGATTTTAAAGTTGTCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTATATTTCAACCAATCCAGGTGAAGGATTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTATCTCGACTTATGCTAGCCATTAAGTCCGCCTTTGCTCGAAAAGAAGATAAAACTA
GTATTGTCTTTGATGAGGTTGATACTGGAGTGTCGGGCCGCGTAGCCCAGGCTATCGCACAAAAGATTCATAAGATTGGA
AGTCATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCTCGTGTTCGTCTCCTAACACCTGAAGAAAGAGTTGAGGAAATCGCCAAGATGCTTG
CAGGTGATAATTTGACTGATGCTGCCTTGAGTCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.45