Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   HRE60_RS06880 Genome accession   NZ_CP054153
Coordinates   1562603..1564096 (-) Length   497 a.a.
NCBI ID   WP_181670559.1    Uniprot ID   A0A7L6WMM5
Organism   Streptococcus salivarius strain DB-B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557603..1569096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS06850 (HRE60_06850) - 1557732..1558109 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  HRE60_RS06855 (HRE60_06855) - 1558114..1558812 (+) 699 WP_084869724.1 ABC transporter ATP-binding protein -
  HRE60_RS06860 (HRE60_06860) - 1558824..1559609 (+) 786 WP_181670556.1 ABC transporter permease -
  HRE60_RS06865 (HRE60_06865) amiF 1559660..1560589 (-) 930 WP_181670557.1 ATP-binding cassette domain-containing protein Regulator
  HRE60_RS06870 (HRE60_06870) amiE 1560582..1561667 (-) 1086 WP_181670558.1 ABC transporter ATP-binding protein Regulator
  HRE60_RS06875 (HRE60_06875) amiD 1561677..1562603 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  HRE60_RS06880 (HRE60_06880) amiC 1562603..1564096 (-) 1494 WP_181670559.1 ABC transporter permease Regulator
  HRE60_RS06885 (HRE60_06885) amiA 1564157..1566127 (-) 1971 WP_181670560.1 peptide ABC transporter substrate-binding protein Regulator
  HRE60_RS06890 (HRE60_06890) amiA 1566308..1568278 (-) 1971 WP_181670561.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55845.62 Da        Isoelectric Point: 10.0102

>NTDB_id=451178 HRE60_RS06880 WP_181670559.1 1562603..1564096(-) (amiC) [Streptococcus salivarius strain DB-B5]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIEYYDTKELQEKAS
SVDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYAHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGDDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGIL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVGVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=451178 HRE60_RS06880 WP_181670559.1 1562603..1564096(-) (amiC) [Streptococcus salivarius strain DB-B5]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCCGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTATATCGAGTACTACGACACCAAAGAGTTGCAGGAGAAAGCTAGC
TCAGTTGACAAGTCGGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATTTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGCAAACAATTCTATGCGACACGTGATGTGCCGGTGCTTGAACGTGTGTTTG
GTTTCTATGCACACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATT
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGGACTAAGCATAAATACTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACCTATGCTGAGCAGGGTGTTC
TTGATGTTATTACACAAGGACAAGGGCAAACCCAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAAGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGGGATCGTTCTTACTATGGTGACGACCCTTACAC
AGCTACTAAGAGTCGCTACCAGTACCCATCAATGGTGACAAGTTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTGTCAACTGGTATCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
TTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTAATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCCATTTGGATTCGTCGTTACATGATCGACTTGCAATCACAAGACTTCGTCCGTTTTGCACGCGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATTCCAGCATCTATCGTTGG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCAGTTCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTGGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6WMM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.592

100

0.986
  amiC Streptococcus thermophilus LMG 18311

97.183

100

0.972
  amiC Streptococcus thermophilus LMD-9

96.781

100

0.968