Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   HRE60_RS01305 Genome accession   NZ_CP054153
Coordinates   246847..247746 (+) Length   299 a.a.
NCBI ID   WP_181670913.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 241847..252746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS01285 (HRE60_01285) trkA 242998..244347 (-) 1350 WP_181670911.1 Trk system potassium transporter TrkA -
  HRE60_RS01290 (HRE60_01290) - 244638..245147 (+) 510 WP_049529100.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  HRE60_RS01295 (HRE60_01295) - 245457..246014 (+) 558 WP_181670912.1 ECF transporter S component -
  HRE60_RS01300 (HRE60_01300) - 246017..246667 (+) 651 WP_002883719.1 phosphatase PAP2 family protein -
  HRE60_RS01305 (HRE60_01305) comR 246847..247746 (+) 900 WP_181670913.1 XRE family transcriptional regulator Regulator
  HRE60_RS01310 (HRE60_01310) comA 247921..250017 (+) 2097 WP_181670914.1 peptide cleavage/export ABC transporter Regulator
  HRE60_RS01315 (HRE60_01315) - 250127..250459 (+) 333 WP_014633880.1 DUF805 domain-containing protein -
  HRE60_RS01320 (HRE60_01320) - 250511..251905 (-) 1395 WP_238799504.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35098.64 Da        Isoelectric Point: 5.5727

>NTDB_id=451148 HRE60_RS01305 WP_181670913.1 246847..247746(+) (comR) [Streptococcus salivarius strain DB-B5]
MNIKDSIGLRIKTERELQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKSMTDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQFDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKKAAENYDKAIMFASVLEDSVLEESIRAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=451148 HRE60_RS01305 WP_181670913.1 246847..247746(+) (comR) [Streptococcus salivarius strain DB-B5]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACTCCAGCAGATGTCACGTGAAGTACTATGTTT
AGATGGTGCGGAATTAACTGTTCGTCAGTTAATTCGTATTGAAAAGGGAGAATCTCTCCCGTCTTTGGATAAATTATCTT
ATATCGCCAAACGTTTAGGAAAAAGTATGACTGATTTATTGGATCATGACAATATTACTATCCCTGACGAATACTACGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTATAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAGGT
CTACGAGAAATTCTTTGAACTTCTCCCAGAAGAAGAATTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
GTTGGGAAGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTTTATGGAAGAAAACAGTTTGACAAAAAACTTTTTGAAAGGAT
TGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTCTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAAATTTTTCACAATTCCTTTTCAGACTTCTTAACAGTTGTGGATAAAGCATTAGCCGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCTAAATATGAACTTCTGCATAAGGGAAATAAGAAAAAGGC
TGCAGAGAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAAGAAAGTATAAGAGCAGGGA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius SK126

98.997

100

0.99
  comR Streptococcus salivarius strain HSISS4

97.659

100

0.977
  comR Streptococcus thermophilus LMG 18311

94.314

100

0.943
  comR Streptococcus thermophilus LMD-9

93.645

100

0.936
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

41.472

100

0.415