Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6G22_RS05695 Genome accession   NZ_CP065737
Coordinates   1075501..1076760 (+) Length   419 a.a.
NCBI ID   WP_010905110.1    Uniprot ID   Q9CJA3
Organism   Lactococcus lactis strain FDAARGOS_865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1070501..1081760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G22_RS05665 (I6G22_05670) prmA 1070854..1071807 (-) 954 WP_023189501.1 50S ribosomal protein L11 methyltransferase -
  I6G22_RS05670 (I6G22_05675) - 1071879..1072313 (-) 435 WP_021722897.1 YdeI/OmpD-associated family protein -
  I6G22_RS05675 (I6G22_05680) - 1072351..1072635 (-) 285 WP_010905114.1 hypothetical protein -
  I6G22_RS05680 (I6G22_05685) - 1072766..1074319 (-) 1554 WP_025016995.1 ABC-F family ATP-binding cassette domain-containing protein -
  I6G22_RS05685 (I6G22_05690) - 1074349..1074816 (-) 468 WP_015425634.1 DUF3013 family protein -
  I6G22_RS05690 (I6G22_05695) - 1074969..1075457 (+) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  I6G22_RS05695 (I6G22_05700) rarA 1075501..1076760 (+) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  I6G22_RS05700 (I6G22_05705) spo0J 1076815..1077600 (+) 786 WP_023189497.1 ParB/RepB/Spo0J family partition protein Regulator
  I6G22_RS05705 (I6G22_05710) - 1077653..1079434 (-) 1782 WP_025016994.1 heavy metal translocating P-type ATPase -
  I6G22_RS05710 (I6G22_05715) rpmF 1079798..1079971 (+) 174 WP_010905107.1 50S ribosomal protein L32 -
  I6G22_RS05715 (I6G22_05720) rpmG 1080001..1080150 (+) 150 WP_003132258.1 50S ribosomal protein L33 -
  I6G22_RS05720 (I6G22_05725) - 1080717..1080884 (+) 168 WP_003132257.1 lactococcin family bacteriocin -
  I6G22_RS05725 (I6G22_05730) - 1080886..1081188 (+) 303 WP_003132256.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46781.10 Da        Isoelectric Point: 5.7588

>NTDB_id=451013 I6G22_RS05695 WP_010905110.1 1075501..1076760(+) (rarA) [Lactococcus lactis strain FDAARGOS_865]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=451013 I6G22_RS05695 WP_010905110.1 1075501..1076760(+) (rarA) [Lactococcus lactis strain FDAARGOS_865]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAACGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
GACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
GAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAAGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

AAA C-terminal domain (AAA_assoc_2)

(173-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.479

100

0.599