Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABZJ_RS04235 Genome accession   NC_017171
Coordinates   899989..900807 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii MDR-ZJ06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 894989..905807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZJ_RS04220 (ABZJ_03549) pilE 895206..895631 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ABZJ_RS04225 (ABZJ_03550) pilY2 895628..896110 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ABZJ_RS04230 (ABZJ_03551) pilY1 896123..899977 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  ABZJ_RS04235 (ABZJ_03552) pilX 899989..900807 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABZJ_RS04240 (ABZJ_03553) pilW 900804..901805 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABZJ_RS04245 (ABZJ_03554) pilV 901806..902366 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  ABZJ_RS04250 (ABZJ_03555) fimU 902360..902833 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABZJ_RS04255 (ABZJ_03556) ispH 903003..903953 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABZJ_RS04260 (ABZJ_03557) gmk 904076..904705 (+) 630 WP_000015937.1 guanylate kinase -
  ABZJ_RS04265 (ABZJ_03558) rpoZ 904778..905056 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABZJ_RS04270 (ABZJ_04120) - 905095..905224 (+) 130 Protein_822 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=45026 ABZJ_RS04235 WP_000149374.1 899989..900807(-) (pilX) [Acinetobacter baumannii MDR-ZJ06]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=45026 ABZJ_RS04235 WP_000149374.1 899989..900807(-) (pilX) [Acinetobacter baumannii MDR-ZJ06]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment