Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FOC62_RS03330 Genome accession   NZ_CP054017
Coordinates   670417..670734 (-) Length   105 a.a.
NCBI ID   WP_002451891.1    Uniprot ID   -
Organism   Staphylococcus warneri strain FDAARGOS_754     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 665417..675734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC62_RS03305 (FOC62_03310) gcvPA 665995..667344 (-) 1350 WP_002451896.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  FOC62_RS03310 (FOC62_03315) gcvT 667363..668454 (-) 1092 WP_002451895.1 glycine cleavage system aminomethyltransferase GcvT -
  FOC62_RS03315 (FOC62_03320) - 668627..669145 (-) 519 WP_037552472.1 shikimate kinase -
  FOC62_RS03320 (FOC62_03325) - 669304..669801 (-) 498 WP_002451893.1 competence type IV pilus minor pilin ComGF -
  FOC62_RS03325 (FOC62_03330) comGD 669999..670439 (-) 441 WP_037552470.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOC62_RS03330 (FOC62_03335) comGC 670417..670734 (-) 318 WP_002451891.1 competence type IV pilus major pilin ComGC Machinery gene
  FOC62_RS03335 (FOC62_03340) comGB 670747..671814 (-) 1068 WP_002451890.1 competence type IV pilus assembly protein ComGB -
  FOC62_RS03340 (FOC62_03345) comGA 671786..672760 (-) 975 WP_002451889.1 competence type IV pilus ATPase ComGA Machinery gene
  FOC62_RS03345 (FOC62_03350) - 672817..673440 (-) 624 WP_002451888.1 MBL fold metallo-hydrolase -
  FOC62_RS03350 (FOC62_03355) - 673444..673767 (-) 324 WP_002451887.1 MTH1187 family thiamine-binding protein -
  FOC62_RS03355 (FOC62_03360) - 673767..674753 (-) 987 WP_002451886.1 ROK family glucokinase -
  FOC62_RS03360 (FOC62_03365) - 674750..674953 (-) 204 WP_002451885.1 YqgQ family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11702.66 Da        Isoelectric Point: 8.4954

>NTDB_id=450188 FOC62_RS03330 WP_002451891.1 670417..670734(-) (comGC) [Staphylococcus warneri strain FDAARGOS_754]
MKKNDYSLKTKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMINSQIEAYTLKHNRNPNTIQDLITEG
YIKENQRSCKTGETISISNGEAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=450188 FOC62_RS03330 WP_002451891.1 670417..670734(-) (comGC) [Staphylococcus warneri strain FDAARGOS_754]
ATGAAAAAAAACGACTACTCACTTAAAACTAAAGCTTTCACCTTAATCGAGATGCTATTAGTATTATTAATAATAAGTTT
ATTACTTATTTTAATTATTCCTAACATTGCCAAACAAACGGCTCATATACAATCAACCGGTTGCGATGCACAAGTTAAAA
TGATAAATAGCCAAATTGAAGCTTATACACTAAAGCATAATAGAAATCCTAATACTATACAGGATTTAATTACAGAAGGA
TATATTAAAGAGAATCAAAGAAGTTGTAAAACAGGTGAAACAATTTCAATAAGTAATGGCGAAGCAGTTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

84.536

92.381

0.781
  comGC Staphylococcus aureus N315

84.536

92.381

0.781
  comYC Streptococcus gordonii str. Challis substr. CH1

44.444

94.286

0.419
  comYC Streptococcus suis isolate S10

50

76.19

0.381
  comGC/cglC Streptococcus pneumoniae TIGR4

42.553

89.524

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371