Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FOC62_RS03340 Genome accession   NZ_CP054017
Coordinates   671786..672760 (-) Length   324 a.a.
NCBI ID   WP_002451889.1    Uniprot ID   -
Organism   Staphylococcus warneri strain FDAARGOS_754     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 666786..677760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC62_RS03310 (FOC62_03315) gcvT 667363..668454 (-) 1092 WP_002451895.1 glycine cleavage system aminomethyltransferase GcvT -
  FOC62_RS03315 (FOC62_03320) - 668627..669145 (-) 519 WP_037552472.1 shikimate kinase -
  FOC62_RS03320 (FOC62_03325) - 669304..669801 (-) 498 WP_002451893.1 competence type IV pilus minor pilin ComGF -
  FOC62_RS03325 (FOC62_03330) comGD 669999..670439 (-) 441 WP_037552470.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOC62_RS03330 (FOC62_03335) comGC 670417..670734 (-) 318 WP_002451891.1 competence type IV pilus major pilin ComGC Machinery gene
  FOC62_RS03335 (FOC62_03340) comGB 670747..671814 (-) 1068 WP_002451890.1 competence type IV pilus assembly protein ComGB -
  FOC62_RS03340 (FOC62_03345) comGA 671786..672760 (-) 975 WP_002451889.1 competence type IV pilus ATPase ComGA Machinery gene
  FOC62_RS03345 (FOC62_03350) - 672817..673440 (-) 624 WP_002451888.1 MBL fold metallo-hydrolase -
  FOC62_RS03350 (FOC62_03355) - 673444..673767 (-) 324 WP_002451887.1 MTH1187 family thiamine-binding protein -
  FOC62_RS03355 (FOC62_03360) - 673767..674753 (-) 987 WP_002451886.1 ROK family glucokinase -
  FOC62_RS03360 (FOC62_03365) - 674750..674953 (-) 204 WP_002451885.1 YqgQ family protein -
  FOC62_RS03365 (FOC62_03370) - 674943..676397 (-) 1455 WP_002451884.1 rhomboid family intramembrane serine protease -
  FOC62_RS03370 (FOC62_03375) - 676394..676948 (-) 555 WP_002451883.1 5-formyltetrahydrofolate cyclo-ligase -
  FOC62_RS03375 (FOC62_03380) rpmG 677183..677332 (-) 150 WP_002451882.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37158.38 Da        Isoelectric Point: 9.2656

>NTDB_id=450189 FOC62_RS03340 WP_002451889.1 671786..672760(-) (comGA) [Staphylococcus warneri strain FDAARGOS_754]
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTPYETLDIGVYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITKSSQQRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=450189 FOC62_RS03340 WP_002451889.1 671786..672760(-) (comGA) [Staphylococcus warneri strain FDAARGOS_754]
TTGAAAATATTATTTCAAGAGATAATTAATAAAGCCATAGTATATAAAGCAAGTGACGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACACCCTACGAAACACTTGATATAGGGGTTTACCGTAAACTAC
TCGTTTTTATGAAATTCCAAGCAGGATTGGATGTGTCGACACAGCAAATTGCTCAAAGTGGGCGTTACACCTATAAATTA
AGGTCAGTTTATTACTTACGTATTTCAACTCTCCCATTATCAATCGGCAGTGAAAGTTGTGTAATTAGAATCGTTCCTCA
ATATTTTCAAAATAAAAAGGAAACATATGAATTTAATGATTTTAAACATTTAATGAATAAGAAACAAGGATTACTACTTT
TTACAGGACCTACTGGTTCTGGTAAAAGCACACTCATGTATCAAATGGTTATGTATGCTCAAAAAGAACTGAATCTTAAT
GTGATATCTATAGAAGATCCTGTAGAACAAATTTTAAAAGGCATTACTCAAATCTCAGTAAATACTAAGGCTGGTATCAC
TTATGCAAGTTCATTTAAAGCAATACTTCGATGTGACCCAGATGTCATTTTAATTGGAGAAATCAGAGATGCAGAAATAG
CAAAGTATGTATTTCAAGCTAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGTAAGGGGGCGTTA
TTGAGATTATTAGAAATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGATTAATAAC
CAAATCTAGTCAACAACGCCAATTAGTATGTGAACTTATGTTTAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCATTTAAACGTTTATCTTCAAAACTCGATGATATGACTAAAGAGGGTATTATATGTGAAACAATTGCT
GATAAATATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

74.074

100

0.741
  comGA Staphylococcus aureus N315

74.074

100

0.741