Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FOC62_RS03325 Genome accession   NZ_CP054017
Coordinates   669999..670439 (-) Length   146 a.a.
NCBI ID   WP_037552470.1    Uniprot ID   -
Organism   Staphylococcus warneri strain FDAARGOS_754     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 664999..675439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC62_RS03305 (FOC62_03310) gcvPA 665995..667344 (-) 1350 WP_002451896.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  FOC62_RS03310 (FOC62_03315) gcvT 667363..668454 (-) 1092 WP_002451895.1 glycine cleavage system aminomethyltransferase GcvT -
  FOC62_RS03315 (FOC62_03320) - 668627..669145 (-) 519 WP_037552472.1 shikimate kinase -
  FOC62_RS03320 (FOC62_03325) - 669304..669801 (-) 498 WP_002451893.1 competence type IV pilus minor pilin ComGF -
  FOC62_RS03325 (FOC62_03330) comGD 669999..670439 (-) 441 WP_037552470.1 competence type IV pilus minor pilin ComGD Machinery gene
  FOC62_RS03330 (FOC62_03335) comGC 670417..670734 (-) 318 WP_002451891.1 competence type IV pilus major pilin ComGC Machinery gene
  FOC62_RS03335 (FOC62_03340) comGB 670747..671814 (-) 1068 WP_002451890.1 competence type IV pilus assembly protein ComGB -
  FOC62_RS03340 (FOC62_03345) comGA 671786..672760 (-) 975 WP_002451889.1 competence type IV pilus ATPase ComGA Machinery gene
  FOC62_RS03345 (FOC62_03350) - 672817..673440 (-) 624 WP_002451888.1 MBL fold metallo-hydrolase -
  FOC62_RS03350 (FOC62_03355) - 673444..673767 (-) 324 WP_002451887.1 MTH1187 family thiamine-binding protein -
  FOC62_RS03355 (FOC62_03360) - 673767..674753 (-) 987 WP_002451886.1 ROK family glucokinase -
  FOC62_RS03360 (FOC62_03365) - 674750..674953 (-) 204 WP_002451885.1 YqgQ family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16981.13 Da        Isoelectric Point: 10.4477

>NTDB_id=450187 FOC62_RS03325 WP_037552470.1 669999..670439(-) (comGD) [Staphylococcus warneri strain FDAARGOS_754]
MAKQLQIKAYNFIEMLMVLFILSILLVCTISSKNLLTISKSNDDMNINQLITQINYIKSKAISEKQSITLIFYNQSSNIK
VIEEHGNKYQIKIRDGKIVKITKINQITFDKNGNINHFGSLDIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=450187 FOC62_RS03325 WP_037552470.1 669999..670439(-) (comGD) [Staphylococcus warneri strain FDAARGOS_754]
ATGGCGAAGCAGTTGCAAATTAAAGCGTACAATTTTATAGAAATGTTAATGGTGTTATTTATTTTGTCGATTTTATTGGT
ATGTACTATAAGTAGTAAAAATCTATTAACGATATCAAAGAGCAATGATGACATGAATATCAATCAACTCATCACTCAAA
TAAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATATTTTATAATCAGTCTTCTAACATTAAA
GTTATAGAAGAACACGGTAATAAATATCAAATAAAAATAAGAGATGGAAAGATCGTAAAAATAACAAAAATAAACCAAAT
TACCTTTGATAAAAATGGTAATATTAATCATTTTGGTTCGCTAGACATTAAAATGAAACATTCAATATATAAAGTTATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

48.993

100

0.5
  comGD Staphylococcus aureus N315

48.993

100

0.5