NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	I5367_RS12615	Genome accession	NZ_CP065539
Coordinates	2603511..2604116 (-)	Length	201 a.a.
NCBI ID	WP_003152683.1	Uniprot ID	A7Z769
Organism	Bacillus amyloliquefaciens strain DGL1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2598511..2609116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5367_RS12580 (I5367_12580)	-	2598524..2599180 (-)	657	WP_003152699.1	DUF421 domain-containing protein	-
I5367_RS12585 (I5367_12585)	-	2599347..2599733 (+)	387	WP_003152697.1	TIGR04086 family membrane protein	-
I5367_RS12590 (I5367_12590)	yajC	2599785..2600063 (-)	279	WP_041482206.1	preprotein translocase subunit YajC	-
I5367_RS12595 (I5367_12595)	tgt	2600076..2601221 (-)	1146	WP_007408186.1	tRNA guanosine(34) transglycosylase Tgt	-
I5367_RS12600 (I5367_12600)	queA	2601249..2602277 (-)	1029	WP_012118092.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
I5367_RS12605 (I5367_12605)	-	2602303..2602503 (-)	201	WP_023357061.1	DUF2905 domain-containing protein	-
I5367_RS12610 (I5367_12610)	ruvB	2602496..2603500 (-)	1005	WP_007408185.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
I5367_RS12615 (I5367_12615)	ruvA	2603511..2604116 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
I5367_RS12620 (I5367_12620)	-	2604251..2604760 (-)	510	WP_012118093.1	intercompartmental signaling factor BofC	-
I5367_RS19595	-	2604892..2605011 (-)	120	WP_023357063.1	hypothetical protein	-
I5367_RS12630 (I5367_12630)	-	2605145..2605738 (-)	594	WP_014721606.1	YhcN/YlaJ family sporulation lipoprotein	-
I5367_RS12635 (I5367_12635)	safA	2605886..2607106 (-)	1221	WP_012118096.1	SafA/ExsA family spore coat assembly protein	-
I5367_RS12640 (I5367_12640)	nadA	2607233..2608336 (-)	1104	WP_012118097.1	quinolinate synthase NadA	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22414.85 Da Isoelectric Point: 5.1597

                                >NTDB_id=450026 I5367_RS12615 WP_003152683.1 2603511..2604116(-) (ruvA) [Bacillus amyloliquefaciens strain DGL1]

MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL

EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=450026 I5367_RS12615 WP_003152683.1 2603511..2604116(-) (ruvA) [Bacillus amyloliquefaciens strain DGL1]

GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA

GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGATG

CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCG

AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT

GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC

CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT

GAAGCGCTCCGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC

AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z769

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408

Detailed information NTG0450026