Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FOC71_RS04595 Genome accession   NZ_CP053999
Coordinates   889689..890303 (+) Length   204 a.a.
NCBI ID   WP_225791046.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 884689..895303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS04585 (FOC71_04585) mgtA 886219..888873 (+) 2655 WP_003073527.1 magnesium-translocating P-type ATPase -
  FOC71_RS04590 (FOC71_04590) upp 888971..889600 (+) 630 WP_003025639.1 uracil phosphoribosyltransferase -
  FOC71_RS04595 (FOC71_04595) clpP 889689..890303 (+) 615 WP_225791046.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FOC71_RS04600 (FOC71_04600) - 890394..890663 (+) 270 WP_003073520.1 DUF2129 domain-containing protein -
  FOC71_RS04605 (FOC71_04605) - 890746..891909 (+) 1164 WP_003073517.1 ABC transporter substrate-binding protein -
  FOC71_RS04610 (FOC71_04610) - 892293..893162 (+) 870 WP_037584539.1 branched-chain amino acid ABC transporter permease -
  FOC71_RS04615 (FOC71_04615) - 893166..894116 (+) 951 WP_003073511.1 branched-chain amino acid ABC transporter permease -
  FOC71_RS04620 (FOC71_04620) - 894116..894880 (+) 765 WP_003073506.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22424.53 Da        Isoelectric Point: 4.6199

>NTDB_id=450013 FOC71_RS04595 WP_225791046.1 889689..890303(+) (clpP) [Streptococcus intermedius strain FDAARGOS_769]
MSDEKENTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGAVEDNMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAG
LAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEK
ILADNSGKTVKQVHKDAERDYWMSAQETLDYGFIDEIMANNNLN

Nucleotide


Download         Length: 615 bp        

>NTDB_id=450013 FOC71_RS04595 WP_225791046.1 889689..890303(+) (clpP) [Streptococcus intermedius strain FDAARGOS_769]
ATATCAGATGAAAAGGAGAATACAATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGCTCGTACGATATTTA
CTCACGTCTTTTAAAAGATCGCATTATTATGCTAACTGGAGCAGTTGAAGACAACATGGCCAATTCTATTATTGCCCAAC
TGCTTTTCCTAGATGCTCAAGATAGTACAAAGGATATTTATCTTTATATCAATACACCAGGAGGTTCTGTATCGGCGGGT
CTAGCGATTGTCGATACAATGAACTTCATCAAATCAGATGTTCAAACAATTGTCATGGGAATGGCTGCATCCATGGGAAC
AATCATCGCTTCAAGTGGTGCTAAAGGCAAACGCTTTATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTG
GAACTGGTGGCGGTACGCAACAAACCGATATGGCGATTGCTGCTGAACATTTGCTGAAAACTCGAAACAATTTGGAAAAA
ATTCTTGCAGATAACTCTGGTAAGACCGTTAAGCAAGTTCATAAAGATGCTGAACGTGACTACTGGATGAGTGCTCAAGA
AACACTAGATTATGGTTTCATTGATGAAATCATGGCAAATAATAATTTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(19-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

91.837

96.078

0.882
  clpP Streptococcus pneumoniae D39

91.837

96.078

0.882
  clpP Streptococcus pneumoniae R6

91.837

96.078

0.882
  clpP Streptococcus pneumoniae TIGR4

91.837

96.078

0.882
  clpP Streptococcus thermophilus LMD-9

91.795

95.588

0.877
  clpP Streptococcus thermophilus LMG 18311

91.795

95.588

0.877
  clpP Streptococcus mutans UA159

88.177

99.51

0.877
  clpP Streptococcus pyogenes MGAS315

91.282

95.588

0.873
  clpP Streptococcus pyogenes JRS4

91.282

95.588

0.873
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

95.588

0.814
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

95.588

0.809
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

94.608

0.554
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

94.118

0.544