Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   FOC71_RS04370 Genome accession   NZ_CP053999
Coordinates   838103..839404 (+) Length   433 a.a.
NCBI ID   WP_003073629.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 833103..844404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS04355 (FOC71_04355) - 833373..836024 (+) 2652 WP_003073634.1 valine--tRNA ligase -
  FOC71_RS04360 (FOC71_04360) cysK 836383..837312 (-) 930 WP_003073632.1 cysteine synthase A -
  FOC71_RS04365 (FOC71_04365) - 837411..838046 (-) 636 WP_003073631.1 YigZ family protein -
  FOC71_RS04370 (FOC71_04370) comFA/cflA 838103..839404 (+) 1302 WP_003073629.1 DEAD/DEAH box helicase Machinery gene
  FOC71_RS04375 (FOC71_04375) - 839401..840066 (+) 666 WP_003073628.1 ComF family protein -
  FOC71_RS04380 (FOC71_04380) raiA 840145..840687 (+) 543 WP_003073626.1 ribosome-associated translation inhibitor RaiA -
  FOC71_RS04385 (FOC71_04385) rsmD 840886..841425 (+) 540 WP_003073624.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FOC71_RS04390 (FOC71_04390) coaD 841415..841912 (+) 498 WP_003073622.1 pantetheine-phosphate adenylyltransferase -
  FOC71_RS04395 (FOC71_04395) sepM 841893..842948 (+) 1056 WP_003073620.1 SepM family pheromone-processing serine protease Regulator
  FOC71_RS04400 (FOC71_04400) - 843230..843793 (+) 564 WP_003073618.1 YutD family protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49265.07 Da        Isoelectric Point: 9.1201

>NTDB_id=450009 FOC71_RS04370 WP_003073629.1 838103..839404(+) (comFA/cflA) [Streptococcus intermedius strain FDAARGOS_769]
MIELQDCLGRIFTRSQLPLGLQQQAQTLSGMIEKKGKLWCNRCGQVVNKEKQQLPIGAYYCRPCVRLGRVRSDEKLYYFP
QAEFPKTNVLKWEGRLTDYQDKVSQGLVEAVAKQKNSLVHAVTGAGKTEMIYQVVAQVINEGGAVCLASPRIDVCLELHR
RLQEDFSCDISLLHGESEVYFRSPLVIATTHQLLKFYRAFDLLIVDEVDAFPYVDNPMLYHAVAQSVKEKSTIIFLTATS
TDKLDKKVSKGELNRLSLPRRFHGNPLIVPQKVWLENFQKYLNQKKLVPKLEQFVKKQRKTGFPLLIFASEIKRGQELAE
VLQSYFSSENVGFVASTTENRLDIVEKFRQKEITILVTTTILERGVTFPCVDVFVVEANHRLFSRSALVQIAGRVGRSMD
RPTGELLFFHDGTNFAIERAIQEIKAMNQEAGL

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=450009 FOC71_RS04370 WP_003073629.1 838103..839404(+) (comFA/cflA) [Streptococcus intermedius strain FDAARGOS_769]
ATGATAGAATTACAAGACTGTTTAGGTCGTATCTTTACAAGAAGCCAATTACCACTAGGATTGCAGCAACAAGCTCAAAC
ATTGTCGGGAATGATAGAAAAAAAGGGGAAATTATGGTGCAATCGTTGTGGACAAGTAGTTAATAAAGAAAAACAGCAAC
TACCAATAGGTGCTTATTATTGCAGGCCATGCGTGCGATTAGGAAGGGTCAGAAGTGATGAAAAACTCTACTATTTTCCA
CAGGCAGAGTTCCCAAAAACGAATGTTTTGAAATGGGAAGGAAGGTTAACAGATTACCAAGATAAGGTTTCTCAAGGTCT
TGTAGAGGCAGTTGCCAAACAAAAAAATAGCCTGGTTCATGCTGTCACAGGAGCAGGAAAAACAGAAATGATCTATCAAG
TGGTGGCACAAGTTATCAATGAAGGTGGTGCAGTTTGCTTGGCTAGCCCTCGAATTGATGTCTGTCTAGAACTACATCGC
AGATTGCAAGAAGATTTTAGTTGTGATATTTCACTCCTGCACGGTGAATCAGAAGTTTATTTTCGCAGTCCTCTTGTGAT
TGCCACAACGCATCAGCTTCTCAAATTTTACCGAGCATTTGATCTTCTTATTGTTGACGAGGTGGATGCCTTTCCTTATG
TGGATAATCCGATGCTTTACCATGCCGTTGCACAATCAGTAAAAGAGAAAAGTACTATAATTTTTCTAACTGCAACCTCT
ACAGATAAGCTGGATAAAAAAGTTAGCAAGGGAGAGTTGAACCGCTTAAGTCTCCCTAGACGTTTTCATGGTAACCCTTT
AATTGTTCCTCAAAAAGTTTGGTTGGAAAATTTTCAAAAATATTTGAATCAAAAAAAGCTAGTTCCTAAGTTGGAACAAT
TTGTTAAAAAGCAAAGAAAAACAGGTTTTCCTCTTCTCATTTTTGCTTCTGAGATTAAAAGAGGACAAGAATTGGCAGAG
GTTCTCCAAAGTTATTTTTCCAGTGAGAACGTTGGCTTTGTAGCCTCAACGACTGAAAATCGACTTGATATTGTAGAGAA
ATTTCGACAAAAAGAAATTACAATTTTAGTAACAACGACAATTCTAGAACGTGGTGTGACTTTTCCTTGTGTAGATGTTT
TTGTGGTGGAGGCCAACCACCGTTTGTTTAGTCGCAGTGCTCTGGTACAAATAGCTGGACGCGTTGGTCGCAGTATGGAT
CGTCCGACAGGTGAGCTACTCTTTTTTCATGATGGGACCAATTTTGCTATTGAACGAGCTATTCAGGAAATTAAGGCGAT
GAATCAGGAGGCTGGTTTATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(292-397)

DEAD/DEAH box helicase (DEAD)

(108-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

69.393

98.845

0.686
  comFA/cflA Streptococcus pneumoniae D39

69.393

98.845

0.686
  comFA/cflA Streptococcus pneumoniae R6

69.393

98.845

0.686
  comFA/cflA Streptococcus mitis NCTC 12261

69.718

98.383

0.686
  comFA/cflA Streptococcus pneumoniae TIGR4

69.159

98.845

0.684
  comFA/cflA Streptococcus mitis SK321

69.014

98.383

0.679
  comFA Lactococcus lactis subsp. cremoris KW2

54.271

91.917

0.499
  comFA Latilactobacillus sakei subsp. sakei 23K

40.233

99.307

0.4