Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   FOC71_RS04415 Genome accession   NZ_CP053999
Coordinates   845406..846089 (-) Length   227 a.a.
NCBI ID   WP_003073610.1    Uniprot ID   A0AAE8KBD8
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 840406..851089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS04385 (FOC71_04385) rsmD 840886..841425 (+) 540 WP_003073624.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FOC71_RS04390 (FOC71_04390) coaD 841415..841912 (+) 498 WP_003073622.1 pantetheine-phosphate adenylyltransferase -
  FOC71_RS04395 (FOC71_04395) sepM 841893..842948 (+) 1056 WP_003073620.1 SepM family pheromone-processing serine protease Regulator
  FOC71_RS04400 (FOC71_04400) - 843230..843793 (+) 564 WP_003073618.1 YutD family protein -
  FOC71_RS04405 (FOC71_04405) rlmN 843827..844909 (+) 1083 WP_003073615.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  FOC71_RS04410 (FOC71_04410) - 844902..845420 (+) 519 WP_003073612.1 VanZ family protein -
  FOC71_RS04415 (FOC71_04415) cclA/cilC 845406..846089 (-) 684 WP_003073610.1 A24 family peptidase Machinery gene
  FOC71_RS04420 (FOC71_04420) - 846240..846767 (+) 528 WP_003073607.1 Dps family protein -
  FOC71_RS04425 (FOC71_04425) - 847029..847253 (+) 225 WP_003073604.1 YqgQ family protein -
  FOC71_RS04430 (FOC71_04430) - 847247..847627 (+) 381 WP_003073602.1 rhodanese-like domain-containing protein -
  FOC71_RS04435 (FOC71_04435) - 847648..848373 (-) 726 WP_003073599.1 16S rRNA pseudouridine(516) synthase -
  FOC71_RS04440 (FOC71_04440) typA 848554..850395 (+) 1842 WP_003073597.1 translational GTPase TypA -
  FOC71_RS04445 (FOC71_04445) - 850458..850742 (+) 285 WP_003073594.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25602.95 Da        Isoelectric Point: 8.2377

>NTDB_id=450011 FOC71_RS04415 WP_003073610.1 845406..846089(-) (cclA/cilC) [Streptococcus intermedius strain FDAARGOS_769]
MVHFYFFLVGSIVASFLGLVVDRFPEQSIIVPSSHCNTCGQKLTPRDLVPILSQLINRLRCRFCGEKIPIRYILLELTGG
CLFLVTSLGYLNINQLILLVSGMTLSLYDQRHQEYPLLIWLFSHVLLLFLTGFNLLMAIFLALGILTHFIDLRIGAGDFL
FLASCSAIFNLTEVLLVLQISSIIGLFLFCLKSRKDRLAFIPCLFGASSILILIKFVVFHQNILCLI

Nucleotide


Download         Length: 684 bp        

>NTDB_id=450011 FOC71_RS04415 WP_003073610.1 845406..846089(-) (cclA/cilC) [Streptococcus intermedius strain FDAARGOS_769]
ATGGTTCATTTTTATTTTTTCTTAGTTGGAAGTATTGTGGCTTCCTTTTTAGGCCTGGTCGTTGATCGCTTTCCTGAACA
ATCTATTATCGTTCCTTCCAGTCATTGCAATACTTGTGGACAAAAATTAACTCCACGTGATTTAGTCCCTATCCTCTCAC
AACTCATCAATCGTCTACGTTGTCGCTTTTGTGGTGAAAAAATTCCCATCCGCTACATTCTCCTAGAACTAACTGGTGGT
TGTCTCTTTCTTGTAACGTCTTTAGGCTATCTAAACATCAACCAGCTCATCCTGCTTGTATCTGGGATGACCTTATCCCT
TTATGATCAGAGGCATCAAGAGTATCCTCTGCTTATTTGGCTATTTTCCCATGTCCTTCTTCTCTTTTTAACTGGTTTCA
ATCTTTTGATGGCTATTTTTTTAGCCCTTGGAATTTTAACTCATTTCATTGATTTGCGCATTGGAGCGGGAGATTTTCTT
TTTCTAGCATCCTGTTCAGCGATTTTTAATCTCACAGAAGTTCTCCTTGTTCTTCAAATTTCCAGCATCATCGGCCTGTT
CCTTTTTTGTTTAAAGTCAAGAAAAGACAGGTTAGCATTTATTCCCTGTCTTTTTGGTGCTAGCAGCATTCTGATTTTGA
TAAAATTCGTTGTTTTCCACCAAAATATTTTATGCCTTATTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

56.279

94.714

0.533
  cclA/cilC Streptococcus mitis NCTC 12261

55.349

94.714

0.524
  cclA/cilC Streptococcus pneumoniae Rx1

54.884

94.714

0.52
  cclA/cilC Streptococcus pneumoniae D39

54.884

94.714

0.52
  cclA/cilC Streptococcus pneumoniae R6

54.884

94.714

0.52
  cclA/cilC Streptococcus pneumoniae TIGR4

54.419

94.714

0.515