Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   FOC71_RS04520 Genome accession   NZ_CP053999
Coordinates   868705..869418 (-) Length   237 a.a.
NCBI ID   WP_003073565.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 863705..874418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS04505 (FOC71_04505) - 864227..865351 (+) 1125 WP_003073569.1 AI-2E family transporter -
  FOC71_RS04510 (FOC71_04510) - 865574..867220 (+) 1647 WP_003073567.1 phosphoenolpyruvate carboxykinase (ATP) -
  FOC71_RS04515 (FOC71_04515) - 867309..868649 (+) 1341 WP_003073566.1 hemolysin family protein -
  FOC71_RS04520 (FOC71_04520) treR 868705..869418 (-) 714 WP_003073565.1 trehalose operon repressor Regulator
  FOC71_RS04525 (FOC71_04525) treP 869597..871609 (+) 2013 WP_117275917.1 PTS system trehalose-specific EIIBC component -
  FOC71_RS04530 (FOC71_04530) treC 871777..873420 (+) 1644 WP_003073558.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27739.77 Da        Isoelectric Point: 8.2603

>NTDB_id=450012 FOC71_RS04520 WP_003073565.1 868705..869418(-) (treR) [Streptococcus intermedius strain FDAARGOS_769]
MKKYEQIFKLLKQDILNETYQIDDYLPSEHELVQTYKVSRDTIRKSLDLLQKAELIQKIRGQGSKVIKQAQIDFPVSNLT
SYQELVQQHGINSKTNLIQLEKITVDKNLSNLTGFPEYRLVWRIVRQRVVDDVASVLDIDYLDKTLVPSLTREIAEQSIY
AYLEEELGLRIAYAQKEITIDPATNRDQILMDIGTDQHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFIDFAKRQKR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=450012 FOC71_RS04520 WP_003073565.1 868705..869418(-) (treR) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAAAAATATGAACAAATTTTCAAACTCCTAAAACAGGATATTCTAAATGAAACATACCAGATCGATGATTATCTCCC
TAGTGAACACGAACTCGTACAAACTTACAAAGTCAGTCGTGATACTATTCGTAAGTCACTTGATTTACTTCAAAAAGCAG
AGCTCATCCAAAAAATAAGAGGACAAGGTTCTAAAGTAATCAAACAAGCACAGATTGATTTTCCTGTCTCCAACCTGACT
AGCTACCAAGAACTCGTGCAGCAGCATGGAATAAATTCTAAAACTAATCTCATCCAATTAGAGAAAATTACAGTTGATAA
AAATTTATCTAATCTCACTGGTTTTCCTGAATATCGTCTGGTATGGCGAATTGTCCGCCAAAGAGTAGTCGATGACGTCG
CTTCTGTTCTAGATATTGATTATCTTGATAAAACTCTTGTCCCTTCCTTAACTAGAGAAATAGCAGAACAATCGATTTAT
GCTTATTTAGAAGAAGAATTAGGACTGCGCATTGCCTATGCCCAAAAAGAAATTACGATTGATCCAGCTACAAACCGTGA
CCAAATCTTGATGGATATCGGAACTGACCAGCATGTCGTTTCTGTCAAGTCCAAAGTTTACCTTGCAGATGGACAACAAT
TTCAATTTACAGATAGTCGCCATAAACTCGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAACGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.136

99.578

0.629