Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC82_RS22450 Genome accession   NZ_CP053986
Coordinates   4858204..4858716 (-) Length   170 a.a.
NCBI ID   WP_062680943.1    Uniprot ID   A0A6J5B160
Organism   Achromobacter denitrificans strain FDAARGOS_788     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4853204..4863716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC82_RS22425 (FOC82_22425) - 4853483..4855033 (-) 1551 WP_062680952.1 AAA family ATPase -
  FOC82_RS22430 (FOC82_22430) - 4855043..4855624 (-) 582 WP_131828763.1 hypothetical protein -
  FOC82_RS22435 (FOC82_22435) - 4855621..4855818 (-) 198 WP_062680949.1 hypothetical protein -
  FOC82_RS22440 (FOC82_22440) - 4855826..4857538 (-) 1713 WP_062680946.1 hypothetical protein -
  FOC82_RS22445 (FOC82_22445) - 4857549..4858028 (-) 480 WP_062680945.1 hypothetical protein -
  FOC82_RS22450 (FOC82_22450) ssb 4858204..4858716 (-) 513 WP_062680943.1 single-stranded DNA-binding protein Machinery gene
  FOC82_RS22455 (FOC82_22455) - 4859017..4860201 (-) 1185 WP_062680941.1 MFS transporter -
  FOC82_RS22460 (FOC82_22460) uvrA 4860380..4863265 (+) 2886 WP_062680939.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18377.39 Da        Isoelectric Point: 5.9656

>NTDB_id=449717 FOC82_RS22450 WP_062680943.1 4858204..4858716(-) (ssb) [Achromobacter denitrificans strain FDAARGOS_788]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGASYGGGGGYDDAPRQQRAPAQRPAPQQRPAPAAAPASSGAN
LADMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=449717 FOC82_RS22450 WP_062680943.1 4858204..4858716(-) (ssb) [Achromobacter denitrificans strain FDAARGOS_788]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGACGCGACCCGGAAGTCCGCTATAGCCCCGACGGGGCGGC
AATCTGCAATATGTCCATTGCCACCACCTCCACCTGGAAAGACAAGGCGTCGGGCGAACGCCGCGAAGAAACGGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGTTCGGTCTACATCGAAGGC
CGCCTGAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGTGGCGCCAGCTACGGTGGTGGCGGCGGCTACGACGACGCGCCGCGCC
AGCAGCGCGCGCCGGCGCAGCGCCCGGCGCCCCAGCAGCGCCCGGCTCCCGCGGCGGCTCCGGCCAGCAGCGGCGCCAAC
CTGGCGGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J5B160

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.588
  ssb Neisseria gonorrhoeae MS11

52.198

100

0.559
  ssb Glaesserella parasuis strain SC1401

50

100

0.547
  ssb Neisseria meningitidis MC58

51.381

100

0.547