Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FOC82_RS23960 Genome accession   NZ_CP053986
Coordinates   5176347..5177792 (+) Length   481 a.a.
NCBI ID   WP_062685236.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain FDAARGOS_788     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5171347..5182792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC82_RS23945 (FOC82_23945) - 5172209..5173537 (+) 1329 WP_062685239.1 amidase -
  FOC82_RS23950 (FOC82_23950) leuA 5173598..5175310 (-) 1713 WP_062685238.1 2-isopropylmalate synthase -
  FOC82_RS23955 (FOC82_23955) - 5175725..5176348 (-) 624 WP_062685237.1 hypothetical protein -
  FOC82_RS23960 (FOC82_23960) rpoN/rpoN1 5176347..5177792 (+) 1446 WP_062685236.1 RNA polymerase factor sigma-54 Machinery gene
  FOC82_RS23965 (FOC82_23965) - 5177914..5178195 (+) 282 WP_062685235.1 (2Fe-2S)-binding protein -
  FOC82_RS23970 (FOC82_23970) - 5178228..5179085 (-) 858 WP_062685234.1 LysR substrate-binding domain-containing protein -
  FOC82_RS23975 (FOC82_23975) - 5179224..5180129 (+) 906 WP_062685254.1 DMT family transporter -
  FOC82_RS23980 (FOC82_23980) bfr 5180495..5180971 (+) 477 WP_062685233.1 bacterioferritin -
  FOC82_RS23985 (FOC82_23985) - 5181051..5181734 (-) 684 WP_172600274.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52758.99 Da        Isoelectric Point: 4.7363

>NTDB_id=449718 FOC82_RS23960 WP_062685236.1 5176347..5177792(+) (rpoN/rpoN1) [Achromobacter denitrificans strain FDAARGOS_788]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLAENPLLERDDEPQSTEEHADSERESSVQDDEP
PLERETPAEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAEPRDVALAGLLIDELDENGYLGSPLEEILGWLP
DEMEPDLDELKAALSLLQSFDPAGIGARDMAECLLLQLRNPDLSRLPEAADGAVLACARRICAEHLSLLATGNTARLCAA
VGCDEPTFRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQATLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QSQLQQARWMIRNVEQRFDTILRVAQAIVEHQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTEGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQAGA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=449718 FOC82_RS23960 WP_062685236.1 5176347..5177792(+) (rpoN/rpoN1) [Achromobacter denitrificans strain FDAARGOS_788]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGACCTGGCCAGCATTTGACGCTGACGCCACAGCTGCA
GCAATCGATCCGATTGTTGCAGCTGTCCACGCTCGACCTTGAGGCCGAGATTTCGCAGGTGCTCGCGGAAAACCCGTTGC
TGGAACGGGACGACGAGCCCCAGTCGACCGAGGAGCACGCCGATTCCGAGCGCGAGTCCTCCGTGCAGGACGACGAGCCG
CCCCTCGAACGCGAGACGCCGGCCGAGGAAATGCCCGGGTCCGGCGGCGTGTACCCGGACGACGATTCCTCCCTGCCCGA
GGCGGCGCGGCCGGACACGCTGCGCGAGCATCTGTTGGGCCAACTGGTGCTGACGCGGGCGGAACCCCGCGACGTGGCCC
TGGCGGGCCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGATCGCCGCTGGAGGAGATCCTGGGCTGGCTGCCG
GACGAAATGGAGCCGGACCTCGACGAACTGAAGGCGGCCCTGTCCCTGCTGCAGTCGTTCGATCCGGCCGGCATCGGCGC
GCGCGACATGGCCGAATGCCTGCTGTTGCAACTGCGCAACCCCGACCTCTCGCGCCTGCCCGAGGCCGCGGACGGCGCGG
TCCTGGCCTGTGCGCGCCGCATCTGCGCCGAGCACCTGTCCCTGCTGGCCACCGGCAATACCGCCCGGCTGTGCGCCGCC
GTGGGCTGCGACGAACCGACCTTCCGGGCGGCCCATGCCCTGATCCTGCGCCTGGAGCCCCGGCCGGGGCGGGCCTGGAC
CGTGCCCGCCGCCGACTACGCGGTGCCCGACGTCATCGTGCGCAAGACCCGCCGCGGCTGGCAGGCCACGCTGAACAGCG
CCGCCGTGCCCCGGCTTCAGATCAACGGGCTGTATGCCCAGATGCTGGGCAACCAGAAGGAATCCGCGCACGCCGGCCTG
CAGTCGCAGCTGCAGCAGGCGCGCTGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCCCAGGC
CATCGTGGAACACCAGACGGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGCTCATCCTGAAGGACATCGCGGGCG
AGCTGGGCTTGCATGAATCCACGATTTCACGGGCCACAACGCAGAAGTACATGCTCACTCCGTTCGGCACCCTGGAGCTC
AAGCGCTTCTTCGGCACCGGCGTGTCCACCGAGGGCGGGGACGCCACCTCGGCCACCGCCGTGCAAACGTTCATCCGCCA
GATGGTGGCGGAAGAGAACCGCGCCAAGCCGCTGTCGGACAGCCAGATCATGCAAAAGCTGGCCGATCAGGGGATAGTCA
TCGCCCGCCGGACGGTGGCAAAGTACCGCGAAGCGCTGCGAATTGCCCCGGCCGCGCTGCGCAAGGCGCAGGCCGGCGCC
CGCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.702

100

0.52