Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FOC87_RS18265 Genome accession   NZ_CP053981
Coordinates   3540821..3541402 (-) Length   193 a.a.
NCBI ID   WP_001100890.1    Uniprot ID   A0AAN0W6G9
Organism   Bacillus thuringiensis strain FDAARGOS_793     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3535821..3546402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC87_RS18235 (FOC87_18240) - 3535835..3536671 (-) 837 WP_000557582.1 PP2C family serine/threonine-protein phosphatase -
  FOC87_RS18240 (FOC87_18245) - 3536655..3537146 (-) 492 WP_002002908.1 HIT family protein -
  FOC87_RS18245 (FOC87_18250) - 3537247..3537414 (-) 168 WP_002053336.1 hypothetical protein -
  FOC87_RS18250 (FOC87_18255) - 3537712..3538548 (-) 837 WP_001059838.1 proline/glycine betaine ABC transporter permease -
  FOC87_RS18255 (FOC87_18260) - 3538541..3539746 (-) 1206 WP_000370610.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  FOC87_RS18260 (FOC87_18265) - 3539918..3540775 (+) 858 WP_001227638.1 glycine betaine ABC transporter substrate-binding protein -
  FOC87_RS18265 (FOC87_18270) clpP 3540821..3541402 (-) 582 WP_001100890.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FOC87_RS18270 (FOC87_18275) - 3541424..3542110 (-) 687 WP_000337493.1 RNA polymerase subunit sigma-70 -
  FOC87_RS18275 (FOC87_18280) - 3542254..3542574 (+) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  FOC87_RS18280 (FOC87_18285) rpiA 3542579..3543241 (+) 663 WP_000364536.1 ribose 5-phosphate isomerase A -
  FOC87_RS18285 (FOC87_18290) - 3543349..3543783 (+) 435 WP_000555725.1 GNAT family N-acetyltransferase -
  FOC87_RS18290 (FOC87_18295) - 3543914..3545281 (-) 1368 WP_001065246.1 lytic polysaccharide monooxygenase -
  FOC87_RS18295 (FOC87_18300) - 3545719..3546237 (-) 519 WP_000720567.1 DNA topology modulation protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21206.47 Da        Isoelectric Point: 5.0776

>NTDB_id=449678 FOC87_RS18265 WP_001100890.1 3540821..3541402(-) (clpP) [Bacillus thuringiensis strain FDAARGOS_793]
MNVIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=449678 FOC87_RS18265 WP_001100890.1 3540821..3541402(-) (clpP) [Bacillus thuringiensis strain FDAARGOS_793]
ATGAATGTAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTGAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCTATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGGCAAGCGA
CGGAAATCGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.404

100

0.544
  clpP Streptococcus pneumoniae Rx1

54.404

100

0.544
  clpP Streptococcus thermophilus LMG 18311

54.404

100

0.544
  clpP Streptococcus pneumoniae D39

54.404

100

0.544
  clpP Streptococcus pneumoniae R6

54.404

100

0.544
  clpP Streptococcus pneumoniae TIGR4

54.404

100

0.544
  clpP Streptococcus pyogenes MGAS315

55.263

98.446

0.544
  clpP Streptococcus pyogenes JRS4

55.263

98.446

0.544
  clpP Streptococcus mutans UA159

52.88

98.964

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.579

98.446

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.474

98.446

0.487