Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FOC76_RS18300 Genome accession   NZ_CP053955
Coordinates   3572108..3572689 (+) Length   193 a.a.
NCBI ID   WP_000991609.1    Uniprot ID   A0A853X8N5
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3567108..3577689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS18275 (FOC76_18275) - 3568230..3569597 (+) 1368 WP_000797164.1 lytic polysaccharide monooxygenase -
  FOC76_RS18280 (FOC76_18280) - 3569728..3570162 (-) 435 WP_000555787.1 GNAT family N-acetyltransferase -
  FOC76_RS18285 (FOC76_18285) rpiA 3570270..3570932 (-) 663 WP_001050002.1 ribose 5-phosphate isomerase A -
  FOC76_RS18290 (FOC76_18290) - 3570937..3571257 (-) 321 WP_001125390.1 2Fe-2S iron-sulfur cluster-binding protein -
  FOC76_RS18295 (FOC76_18295) - 3571400..3572086 (+) 687 WP_000337513.1 RNA polymerase subunit sigma-70 -
  FOC76_RS18300 (FOC76_18300) clpP 3572108..3572689 (+) 582 WP_000991609.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FOC76_RS18305 (FOC76_18305) - 3572736..3573593 (-) 858 WP_001227631.1 glycine betaine ABC transporter substrate-binding protein -
  FOC76_RS18310 (FOC76_18310) - 3573765..3574970 (+) 1206 WP_000370609.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  FOC76_RS18315 (FOC76_18315) - 3574963..3575799 (+) 837 WP_001084764.1 proline/glycine betaine ABC transporter permease -
  FOC76_RS18320 (FOC76_18320) - 3575850..3576085 (-) 236 Protein_3539 hypothetical protein -
  FOC76_RS18325 (FOC76_18325) - 3576291..3576458 (+) 168 WP_002021522.1 hypothetical protein -
  FOC76_RS18330 (FOC76_18330) - 3576559..3577050 (+) 492 WP_002021523.1 HIT family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21192.49 Da        Isoelectric Point: 5.3394

>NTDB_id=449447 FOC76_RS18300 WP_000991609.1 3572108..3572689(+) (clpP) [Bacillus tropicus strain FDAARGOS_782]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=449447 FOC76_RS18300 WP_000991609.1 3572108..3572689(+) (clpP) [Bacillus tropicus strain FDAARGOS_782]
ATGAATGCAATTCCATATGTAGTGGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGTATTATTATTATCGGTTCAGAAATAAATGATCAAGTAGCCAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCCGGCGGATCAACGACAGCGGGATTTGCTATATTAGATACA
ATGAATTTAATTAAACCTGATGTGCAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCAAAAGGGCAGGCAA
CAGAAATTGAAATAACAGCAAAAAGGATATTGAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACGGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACCGCAGAAGAAGCAAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853X8N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMG 18311

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMD-9

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

97.927

0.492