Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   STCNRZ385_RS09550 Genome accession   NZ_CP065495
Coordinates   1835367..1836635 (-) Length   422 a.a.
NCBI ID   WP_002952183.1    Uniprot ID   Q5M295
Organism   Streptococcus thermophilus strain CNRZ385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1830367..1841635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ385_RS09520 (STCNRZ385_09540) - 1831685..1832197 (-) 513 Protein_1819 helix-turn-helix domain-containing protein -
  STCNRZ385_RS10005 - 1832378..1832560 (+) 183 WP_024704268.1 hypothetical protein -
  STCNRZ385_RS09525 (STCNRZ385_09545) - 1832606..1833583 (+) 978 Protein_1821 replication initiation protein -
  STCNRZ385_RS09530 (STCNRZ385_09550) - 1833595..1833783 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  STCNRZ385_RS09535 (STCNRZ385_09555) - 1833785..1834924 (+) 1140 WP_011681729.1 site-specific integrase -
  STCNRZ385_RS09550 (STCNRZ385_09570) rarA 1835367..1836635 (-) 1269 WP_002952183.1 replication-associated recombination protein A Machinery gene
  STCNRZ385_RS09555 (STCNRZ385_09575) rpmB 1836805..1836993 (+) 189 WP_002952184.1 50S ribosomal protein L28 -
  STCNRZ385_RS09560 (STCNRZ385_09580) - 1837120..1837386 (+) 267 WP_011681731.1 IreB family regulatory phosphoprotein -
  STCNRZ385_RS09565 (STCNRZ385_09585) ruvX 1837386..1837805 (+) 420 WP_011681732.1 Holliday junction resolvase RuvX -
  STCNRZ385_RS09570 (STCNRZ385_09590) - 1837914..1838219 (+) 306 WP_180483421.1 DUF1292 domain-containing protein -
  STCNRZ385_RS09575 (STCNRZ385_09595) - 1838432..1840078 (+) 1647 WP_180483423.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46419.92 Da        Isoelectric Point: 6.8977

>NTDB_id=449201 STCNRZ385_RS09550 WP_002952183.1 1835367..1836635(-) (rarA) [Streptococcus thermophilus strain CNRZ385]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=449201 STCNRZ385_RS09550 WP_002952183.1 1835367..1836635(-) (rarA) [Streptococcus thermophilus strain CNRZ385]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCCTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M295

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.666

99.289

0.592