Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FOC86_RS09895 Genome accession   NZ_CP053938
Coordinates   1834719..1835300 (-) Length   193 a.a.
NCBI ID   WP_000991625.1    Uniprot ID   A0A2A8KY00
Organism   Bacillus thuringiensis strain FDAARGOS_792     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1832439..1843626 1834719..1835300 within 0


Gene organization within MGE regions


Location: 1832439..1843626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC86_RS09885 (FOC86_09880) - 1832439..1833644 (-) 1206 WP_000370609.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  FOC86_RS09890 (FOC86_09885) - 1833816..1834673 (+) 858 WP_001227634.1 glycine betaine ABC transporter substrate-binding protein -
  FOC86_RS09895 (FOC86_09890) clpP 1834719..1835300 (-) 582 WP_000991625.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FOC86_RS09900 (FOC86_09895) - 1835322..1836008 (-) 687 WP_000337491.1 RNA polymerase subunit sigma-70 -
  FOC86_RS09905 (FOC86_09900) - 1836152..1836472 (+) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  FOC86_RS09910 (FOC86_09905) rpiA 1836477..1837139 (+) 663 WP_000364539.1 ribose 5-phosphate isomerase A -
  FOC86_RS09915 (FOC86_09910) - 1837247..1837681 (+) 435 WP_000555719.1 GNAT family N-acetyltransferase -
  FOC86_RS09920 (FOC86_09915) - 1837811..1839178 (-) 1368 WP_001065247.1 lytic polysaccharide monooxygenase -
  FOC86_RS09925 (FOC86_09920) - 1839616..1840134 (-) 519 WP_000720566.1 DNA topology modulation protein -
  FOC86_RS27720 - 1840131..1840310 (-) 180 Protein_1915 aminoglycoside phosphotransferase -
  FOC86_RS09930 (FOC86_09925) - 1840344..1840730 (-) 387 WP_001093444.1 DUF2809 domain-containing protein -
  FOC86_RS27875 - 1840796..1840924 (-) 129 WP_000655492.1 hypothetical protein -
  FOC86_RS09935 (FOC86_09930) - 1840946..1841299 (-) 354 WP_000994638.1 MmcQ/YjbR family DNA-binding protein -
  FOC86_RS09940 (FOC86_09935) - 1841312..1841716 (-) 405 WP_000288935.1 GNAT family N-acetyltransferase -
  FOC86_RS09945 (FOC86_09940) - 1841970..1842446 (+) 477 Protein_1920 S-layer homology domain-containing protein -
  FOC86_RS09950 (FOC86_09945) - 1842542..1842754 (+) 213 WP_000820169.1 DUF3006 domain-containing protein -
  FOC86_RS09955 (FOC86_09950) - 1842820..1843626 (-) 807 WP_000540638.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21178.42 Da        Isoelectric Point: 5.0776

>NTDB_id=449201 FOC86_RS09895 WP_000991625.1 1834719..1835300(-) (clpP) [Bacillus thuringiensis strain FDAARGOS_792]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=449201 FOC86_RS09895 WP_000991625.1 1834719..1835300(-) (clpP) [Bacillus thuringiensis strain FDAARGOS_792]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCAAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATCAAACCCGACGTGCAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCATTGCTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCACAAGGGCAAGCGA
CGGAAATTGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A8KY00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544
  clpP Streptococcus pneumoniae Rx1

54.688

99.482

0.544
  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544
  clpP Streptococcus pneumoniae D39

54.688

99.482

0.544
  clpP Streptococcus pneumoniae R6

54.688

99.482

0.544
  clpP Streptococcus pneumoniae TIGR4

54.688

99.482

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487