Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FOC91_RS23200 Genome accession   NZ_CP053931
Coordinates   4229486..4230067 (+) Length   193 a.a.
NCBI ID   WP_000991624.1    Uniprot ID   -
Organism   Bacillus cereus strain FDAARGOS_797     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4224486..4235067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC91_RS23170 (FOC91_23170) - 4224652..4225170 (+) 519 WP_000720567.1 DNA topology modulation protein -
  FOC91_RS23175 (FOC91_23175) - 4225608..4226975 (+) 1368 WP_042512621.1 lytic polysaccharide monooxygenase -
  FOC91_RS23180 (FOC91_23180) - 4227106..4227540 (-) 435 WP_042512622.1 GNAT family N-acetyltransferase -
  FOC91_RS23185 (FOC91_23185) rpiA 4227648..4228310 (-) 663 WP_042511163.1 ribose 5-phosphate isomerase A -
  FOC91_RS23190 (FOC91_23190) - 4228315..4228635 (-) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  FOC91_RS23195 (FOC91_23195) - 4228778..4229464 (+) 687 WP_000337493.1 RNA polymerase subunit sigma-70 -
  FOC91_RS23200 (FOC91_23200) clpP 4229486..4230067 (+) 582 WP_000991624.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FOC91_RS23205 (FOC91_23205) - 4230113..4230970 (-) 858 WP_042512623.1 glycine betaine ABC transporter substrate-binding protein -
  FOC91_RS23210 (FOC91_23210) - 4231142..4232347 (+) 1206 WP_042512624.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  FOC91_RS23215 (FOC91_23215) - 4232340..4233176 (+) 837 WP_001084766.1 proline/glycine betaine ABC transporter permease -
  FOC91_RS23220 (FOC91_23220) - 4233463..4233633 (+) 171 WP_001992228.1 hypothetical protein -
  FOC91_RS23225 (FOC91_23225) - 4233708..4234210 (+) 503 Protein_4314 HIT family protein -
  FOC91_RS23230 (FOC91_23230) - 4234194..4235018 (+) 825 WP_052494321.1 PP2C family serine/threonine-protein phosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21250.48 Da        Isoelectric Point: 4.9174

>NTDB_id=449134 FOC91_RS23200 WP_000991624.1 4229486..4230067(+) (clpP) [Bacillus cereus strain FDAARGOS_797]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTEQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=449134 FOC91_RS23200 WP_000991624.1 4229486..4230067(+) (clpP) [Bacillus cereus strain FDAARGOS_797]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAGCGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAGACACTATGCATGGGATTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCGCAAGGGCAAGCGA
CGGAAATCGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGAGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.539

98.964

0.668
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.167

99.482

0.539
  clpP Streptococcus pneumoniae Rx1

54.167

99.482

0.539
  clpP Streptococcus thermophilus LMG 18311

54.167

99.482

0.539
  clpP Streptococcus pneumoniae D39

54.167

99.482

0.539
  clpP Streptococcus pneumoniae R6

54.167

99.482

0.539
  clpP Streptococcus pneumoniae TIGR4

54.167

99.482

0.539
  clpP Streptococcus pyogenes MGAS315

55.026

97.927

0.539
  clpP Streptococcus pyogenes JRS4

55.026

97.927

0.539
  clpP Streptococcus mutans UA159

52.91

97.927

0.518
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487