Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HQ398_RS00265 Genome accession   NZ_CP053882
Coordinates   51263..51583 (-) Length   106 a.a.
NCBI ID   WP_215807037.1    Uniprot ID   -
Organism   Aeromonas jandaei strain 3036     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 46263..56583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ398_RS00245 (HQ398_00245) - 46656..47345 (-) 690 WP_043851814.1 DnaT-like ssDNA-binding domain-containing protein -
  HQ398_RS00250 (HQ398_00250) - 47585..48556 (+) 972 WP_041210394.1 response regulator -
  HQ398_RS00255 (HQ398_00255) - 48645..50042 (-) 1398 WP_215807035.1 peptide MFS transporter -
  HQ398_RS00260 (HQ398_00260) galU 50256..51167 (-) 912 WP_104015695.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HQ398_RS00265 (HQ398_00265) comEA/comE1 51263..51583 (-) 321 WP_215807037.1 helix-hairpin-helix domain-containing protein Machinery gene
  HQ398_RS00270 (HQ398_00270) pta 51931..54111 (-) 2181 WP_041210398.1 phosphate acetyltransferase -
  HQ398_RS00275 (HQ398_00275) - 54167..55369 (-) 1203 WP_005339118.1 acetate kinase -
  HQ398_RS00280 (HQ398_00280) yfbV 55674..56114 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11305.20 Da        Isoelectric Point: 9.6573

>NTDB_id=448374 HQ398_RS00265 WP_215807037.1 51263..51583(-) (comEA/comE1) [Aeromonas jandaei strain 3036]
MSKNSLPIIMLLSALPLFTLPSQAADKVAPKQATTVAAKQELGKVDINTATLAELTNLKGIGDKKAQAIVDYREKQGKFT
SVDQLVDVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=448374 HQ398_RS00265 WP_215807037.1 51263..51583(-) (comEA/comE1) [Aeromonas jandaei strain 3036]
ATGAGTAAAAACAGCCTGCCCATCATCATGTTGCTGTCCGCCCTCCCGTTGTTCACCCTGCCCTCACAGGCCGCAGACAA
GGTCGCCCCCAAGCAGGCCACCACGGTTGCCGCCAAGCAGGAGCTCGGCAAAGTGGATATCAATACGGCAACCCTTGCCG
AGCTCACCAACCTCAAGGGGATTGGCGACAAAAAGGCCCAAGCCATCGTCGACTATCGCGAAAAACAGGGGAAATTTACC
TCAGTTGATCAACTGGTTGATGTAAACGGCATCGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

47.826

100

0.519
  comEA Vibrio cholerae C6706

50.485

97.17

0.491
  comEA Vibrio cholerae strain A1552

50.485

97.17

0.491
  comEA/celA/cilE Streptococcus mitis NCTC 12261

38.095

99.057

0.377
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

38.235

96.226

0.368
  comEA/celA/cilE Streptococcus pneumoniae Rx1

38.235

96.226

0.368
  comEA/celA/cilE Streptococcus pneumoniae D39

38.235

96.226

0.368
  comEA/celA/cilE Streptococcus pneumoniae R6

38.235

96.226

0.368