Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HQ399_RS05205 Genome accession   NZ_CP053881
Coordinates   1088481..1088801 (-) Length   106 a.a.
NCBI ID   WP_215803050.1    Uniprot ID   -
Organism   Aeromonas jandaei strain 4608     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1083481..1093801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ399_RS05185 (HQ399_05185) - 1083874..1084563 (-) 690 WP_215803048.1 DnaT-like ssDNA-binding domain-containing protein -
  HQ399_RS05190 (HQ399_05190) - 1084803..1085774 (+) 972 WP_041210394.1 response regulator -
  HQ399_RS05195 (HQ399_05195) - 1085863..1087260 (-) 1398 WP_215803049.1 peptide MFS transporter -
  HQ399_RS05200 (HQ399_05200) galU 1087474..1088385 (-) 912 WP_041210396.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HQ399_RS05205 (HQ399_05205) comEA/comE1 1088481..1088801 (-) 321 WP_215803050.1 helix-hairpin-helix domain-containing protein Machinery gene
  HQ399_RS05210 (HQ399_05210) pta 1089140..1091320 (-) 2181 WP_041210398.1 phosphate acetyltransferase -
  HQ399_RS05215 (HQ399_05215) - 1091376..1092578 (-) 1203 WP_005339118.1 acetate kinase -
  HQ399_RS05220 (HQ399_05220) yfbV 1092883..1093323 (+) 441 WP_043851809.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11404.33 Da        Isoelectric Point: 10.0127

>NTDB_id=448356 HQ399_RS05205 WP_215803050.1 1088481..1088801(-) (comEA/comE1) [Aeromonas jandaei strain 4608]
MRKNSLPIIMLLSAIPLFTLPSQAADKVAPKQATTVATKQELGKVDINTATLAELTNLKGIGDKKAQAIVDYREKQGKFT
SVDQLVDVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=448356 HQ399_RS05205 WP_215803050.1 1088481..1088801(-) (comEA/comE1) [Aeromonas jandaei strain 4608]
ATGCGTAAAAACAGCTTGCCCATCATCATGTTGCTCTCCGCCATCCCGTTGTTCACCCTGCCCTCACAGGCCGCAGACAA
GGTCGCCCCCAAGCAGGCCACCACGGTTGCCACCAAGCAGGAGCTCGGCAAAGTGGATATCAATACGGCAACCCTTGCCG
AGCTCACCAACCTCAAGGGAATTGGTGACAAAAAGGCACAAGCCATCGTCGACTATCGCGAAAAACAGGGGAAATTTACC
TCTGTCGATCAACTGGTTGATGTAAACGGCATCGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.957

100

0.509
  comEA Vibrio cholerae C6706

48.544

97.17

0.472
  comEA Vibrio cholerae strain A1552

48.544

97.17

0.472
  comEA/celA/cilE Streptococcus pneumoniae R6

39.423

98.113

0.387
  comEA/celA/cilE Streptococcus pneumoniae Rx1

39.423

98.113

0.387
  comEA/celA/cilE Streptococcus pneumoniae D39

39.423

98.113

0.387
  comEA/celA/cilE Streptococcus mitis NCTC 12261

38.095

99.057

0.377
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

38.235

96.226

0.368