Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   STR1_RS04680 Genome accession   NZ_CP065486
Coordinates   902935..903153 (+) Length   72 a.a.
NCBI ID   WP_011681105.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain R1     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 897935..908153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR1_RS04660 (STR1_04660) - 898575..900233 (-) 1659 WP_011681101.1 NFACT RNA binding domain-containing protein -
  STR1_RS04665 (STR1_04665) - 900556..901512 (+) 957 WP_014727508.1 hypothetical protein -
  STR1_RS04670 (STR1_04670) - 901818..902303 (+) 486 WP_011681103.1 NUDIX domain-containing protein -
  STR1_RS04675 (STR1_04675) - 902307..902498 (+) 192 WP_011681104.1 hypothetical protein -
  STR1_RS04680 prx 902935..903153 (+) 219 WP_011681105.1 hypothetical protein Regulator
  STR1_RS04685 (STR1_04680) - 903355..904023 (+) 669 WP_011681106.1 TraX family protein -
  STR1_RS04690 (STR1_04690) - 904290..904838 (+) 549 WP_011225930.1 DJ-1 family glyoxalase III -
  STR1_RS04695 (STR1_04695) - 904895..905110 (-) 216 WP_011681107.1 hypothetical protein -
  STR1_RS04700 (STR1_04700) - 905109..905882 (+) 774 WP_011681108.1 dihydroorotate dehydrogenase electron transfer subunit -
  STR1_RS04705 (STR1_04705) - 905901..906848 (+) 948 WP_095559349.1 dihydroorotate dehydrogenase -
  STR1_RS04710 (STR1_04710) cas1 906987..907991 (+) 1005 WP_095559350.1 CRISPR-associated endonuclease Cas1 -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8147.18 Da        Isoelectric Point: 4.4665

>NTDB_id=448314 STR1_RS04680 WP_011681105.1 902935..903153(+) (prx) [Streptococcus thermophilus strain R1]
MNSIGKENNIILTYDEFKEAMDNGFIKGDTVQIVRKNGKIHDYVLDGERVEPHEILSLEKVSDIIKELGGDN

Nucleotide


Download         Length: 219 bp        

>NTDB_id=448314 STR1_RS04680 WP_011681105.1 902935..903153(+) (prx) [Streptococcus thermophilus strain R1]
ATGAATAGCATAGGAAAGGAGAATAATATAATACTAACCTATGATGAATTTAAAGAGGCTATGGACAACGGTTTTATTAA
AGGTGATACTGTCCAGATTGTCCGAAAGAATGGTAAGATCCATGACTACGTTTTAGACGGTGAACGAGTTGAGCCACACG
AAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAAGAACTAGGCGGAGACAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

58.621

80.556

0.472
  prx Streptococcus pyogenes MGAS8232

57.627

81.944

0.472
  prx Streptococcus pyogenes MGAS315

55.932

81.944

0.458
  prx Streptococcus pyogenes MGAS315

55.172

80.556

0.444
  prx Streptococcus pyogenes MGAS315

73.81

58.333

0.431
  prx Streptococcus pyogenes MGAS315

65.909

61.111

0.403
  prx Streptococcus pyogenes MGAS315

68.293

56.944

0.389