Detailed information NTG0448141

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CUP3940_RS00505
• Genome accession: NZ_CP053849
• Coordinates: 97883..99289 (-)
• Length: 468 a.a.
• NCBI ID: WP_115632354.1
• Uniprot ID: -
• Organism: Campylobacter upsaliensis RM3940
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 92883..104289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CUP3940_RS00485 (CUP3940_0094)	ctsF	93938..95119 (-)	1182	WP_176318110.1	type II secretion system F family protein	Machinery gene
CUP3940_RS00490 (CUP3940_0095)	ctsE	95116..96723 (-)	1608	WP_115635414.1	GspE/PulE family protein	Machinery gene
CUP3940_RS00495 (CUP3940_0096)	-	96720..97286 (-)	567	WP_115635413.1	CDC27 family protein	-
CUP3940_RS00500 (CUP3940_0097)	-	97288..97890 (-)	603	WP_176318111.1	hypothetical protein	-
CUP3940_RS00505 (CUP3940_0098)	ctsD	97883..99289 (-)	1407	WP_115632354.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CUP3940_RS00510 (CUP3940_0099)	-	99267..99566 (-)	300	WP_004275339.1	hypothetical protein	-
CUP3940_RS00515 (CUP3940_0100)	nifJ	99563..103126 (-)	3564	WP_115635411.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-

Sequence

Protein

• Length: 468 a.a.
• Molecular weight: 52631.27 Da
• Isoelectric Point: 5.0995

>NTDB_id=448141 CUP3940_RS00505 WP_115632354.1 97883..99289(-) (ctsD) [Campylobacter upsaliensis RM3940]
MLRFLLINLFFCSIFYGMDCKKRLFDIHIKESLSIEEALDELASYCTFSIVVKDELAKNELGKMQKSLYISQMTLEEIFK
LLLKENNLNYEFDGKILSIWGISTQIFKLSYITSVREGQSIIKASVDSKPRQNENDLSDESDDNMIKSMEKFDFWQNIEK
EITALLEAYGEVKMPIINANAGIIIVTGTPIQLKKIGEYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFA
STTQNGQNSFIQLQSGQGFVKNLGLRANINFNSVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESSKGTE
NGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPRTIAPDTIQKKLSTVVSMENNQTLI
LGGLISHNQIKEASEVNFLSKIPLLGLLFSGDETSSNSTEIVFIITPSIVDKQMGVLSLKDLGFRHYE

Nucleotide

• Length: 1407 bp

>NTDB_id=448141 CUP3940_RS00505 WP_115632354.1 97883..99289(-) (ctsD) [Campylobacter upsaliensis RM3940]
ATGCTAAGATTTTTATTGATTAATTTGTTTTTTTGTTCAATTTTTTATGGTATGGACTGCAAAAAAAGACTTTTTGATAT
TCACATTAAAGAAAGTTTAAGTATAGAAGAAGCACTTGATGAGCTTGCGAGCTATTGCACTTTTAGCATAGTTGTTAAGG
ATGAATTGGCTAAAAACGAACTAGGAAAAATGCAAAAAAGTCTTTACATTAGCCAAATGACTTTGGAGGAAATTTTTAAG
CTTTTGCTGAAAGAAAATAATTTAAATTATGAATTCGATGGCAAGATTTTAAGCATTTGGGGAATTTCAACGCAAATTTT
TAAGTTAAGTTATATCACTTCCGTTCGCGAGGGACAAAGCATTATTAAGGCTTCTGTGGATTCTAAGCCCAGACAAAATG
AAAATGATTTAAGTGATGAGAGTGATGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATAGAAAAA
GAAATCACTGCTTTATTAGAAGCTTATGGTGAGGTAAAAATGCCTATTATCAATGCAAATGCTGGCATTATCATCGTTAC
AGGCACACCCATACAGCTTAAAAAGATAGGGGAATATATCACTAAGCTTGAAAATAGACTTAAAAAACAAGTGATTATTG
ATGTTAGCATTATCGCTGTGAATTTAAATGAAAATCACTCAAGCGGCATTAATTGGCAAAATTTCAATCTCGATTTTGCC
AGCACTACGCAAAATGGGCAAAATTCTTTTATCCAGCTTCAAAGCGGACAAGGTTTTGTGAAAAATTTAGGTTTAAGGGC
GAATATTAATTTTAATTCTGTTTTGAATTTTCTTTCGCAAAATGGCAAAACTCAGGTTCTTTCAAGCCCTAAACTTATGG
CTTTAAATAATCAACAAGCTATCATTTCGGTAGGTGATACGATCAATTATCAAGTCAAAGAAAGCTCCAAAGGCACAGAA
AATGGCACAACGGTGAGTGAAAGTTTTAGCAATTATTCTATTTTTGTGGGGATTTTATTAAGTATTTTACCTGAAATTTC
GGACGATAATAAAATTATGCTTCGCATTAATCCAAGTCTTAGTGATTTTAAATATCCTCAAGATAATCAAAGACAAAGTA
GCCCCCGCACCATAGCACCTGATACCATACAAAAAAAGCTATCCACAGTCGTTTCTATGGAAAATAATCAAACCTTGATC
TTAGGTGGGCTTATCTCACATAATCAAATCAAAGAAGCAAGTGAGGTCAATTTTCTCTCTAAAATTCCTTTGCTCGGGCT
TTTATTTAGTGGCGATGAGACAAGCTCAAATAGCACGGAAATTGTTTTCATCATCACGCCTAGCATAGTGGATAAGCAAA
TGGGAGTTTTAAGCCTTAAGGATTTGGGATTTAGGCATTATGAGTGA

Domains

Predicted by InterproScan.

• Secretin and TonB N terminus short domain (STN) (48-99)

• Bacterial type II and III secretion system protein (Secretin) (278-451)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	72.516	100	0.733