Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   CUP3940_RS00490 Genome accession   NZ_CP053849
Coordinates   95116..96723 (-) Length   535 a.a.
NCBI ID   WP_115635414.1    Uniprot ID   -
Organism   Campylobacter upsaliensis RM3940     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 90116..101723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUP3940_RS00470 (CUP3940_0091) truD 90176..91297 (+) 1122 WP_115635418.1 tRNA pseudouridine(13) synthase TruD -
  CUP3940_RS00475 (CUP3940_0092) - 91352..91960 (+) 609 WP_115632360.1 hypothetical protein -
  CUP3940_RS00480 (CUP3940_0093) - 92076..93911 (+) 1836 WP_176318109.1 flagellin -
  CUP3940_RS00485 (CUP3940_0094) ctsF 93938..95119 (-) 1182 WP_176318110.1 type II secretion system F family protein Machinery gene
  CUP3940_RS00490 (CUP3940_0095) ctsE 95116..96723 (-) 1608 WP_115635414.1 GspE/PulE family protein Machinery gene
  CUP3940_RS00495 (CUP3940_0096) - 96720..97286 (-) 567 WP_115635413.1 CDC27 family protein -
  CUP3940_RS00500 (CUP3940_0097) - 97288..97890 (-) 603 WP_176318111.1 hypothetical protein -
  CUP3940_RS00505 (CUP3940_0098) ctsD 97883..99289 (-) 1407 WP_115632354.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CUP3940_RS00510 (CUP3940_0099) - 99267..99566 (-) 300 WP_004275339.1 hypothetical protein -

Sequence

Protein


Download         Length: 535 a.a.        Molecular weight: 61216.17 Da        Isoelectric Point: 6.0591

>NTDB_id=448140 CUP3940_RS00490 WP_115635414.1 95116..96723(-) (ctsE) [Campylobacter upsaliensis RM3940]
MMEFLKNLGFDKEAKEGFEDENLRHFLFELYLKNELDLNLLFVNLGVKSEDFLRALARHLDLEFVELKDIDENLCDSFAF
SLLWKNQILPLQKDDESIFILSSKPINLELLSKIEHLFRSKFIKNALCDIYSLNQNLNKLYIKQKLKELSSNLKQELNAN
SKENEQSGVSLLFDFILQEALKLRASDVHIESLESEALIRFRVDGVLRLFCVLEEQLYQALIFHIKLLAHLNVAQSRKAQ
DGSFNKSFEGVEFDFRISTLPLQKGESVVLRILRQDLELLSLENLHFSKQNLALITKNIQKPFGMILLTGPTGSGKSTTL
YACLKSLACVEKKIITAEDPIEYKMPQIQQIALNSKAGLDFSNALRAILRQDPDIIMVGEIRDEESLDIALKGAQTGHLI
LSTLHTNDALSTIERLLDMRAKPYLIASSLNLIIAQRLARRLCPYCKMQKLEDEEVFYEAKGCEKCHFSGFWGRELLEEC
LELDEGLKELIRKNASKNELLTYARKQGFLTMFELGLKKAKSGIISLNELMRVVG

Nucleotide


Download         Length: 1608 bp        

>NTDB_id=448140 CUP3940_RS00490 WP_115635414.1 95116..96723(-) (ctsE) [Campylobacter upsaliensis RM3940]
ATGATGGAATTTTTAAAAAATTTAGGTTTTGACAAAGAAGCAAAAGAAGGCTTTGAAGATGAGAATTTGAGGCATTTTTT
ATTTGAGCTTTATTTAAAAAATGAGCTTGATTTAAATTTGCTTTTTGTCAATTTGGGTGTGAAAAGTGAAGATTTTTTAA
GGGCTTTGGCAAGGCATTTAGATTTAGAATTTGTGGAATTGAAAGATATTGATGAAAATTTGTGTGATTCTTTTGCCTTT
TCTTTGCTTTGGAAAAATCAAATTTTACCCCTACAAAAAGATGATGAAAGTATCTTTATCCTCTCTTCTAAACCCATAAA
TTTGGAGCTTTTAAGTAAAATAGAGCATCTTTTTCGCTCCAAATTTATCAAAAATGCACTTTGCGATATTTATTCCTTAA
ATCAAAATTTAAATAAGCTTTACATCAAGCAAAAATTAAAAGAGTTAAGTAGCAATTTAAAACAAGAATTAAATGCAAAT
TCTAAAGAAAACGAGCAAAGTGGCGTGAGTTTGCTTTTTGATTTTATCTTGCAAGAGGCTTTGAAATTAAGAGCAAGTGA
TGTGCATATAGAAAGTTTGGAAAGTGAAGCCTTGATTCGTTTTCGTGTCGATGGGGTGTTGCGTCTTTTTTGTGTTTTGG
AGGAGCAGCTTTATCAGGCTTTGATTTTTCACATTAAACTTTTGGCACATTTAAATGTCGCCCAAAGCAGAAAGGCACAA
GATGGGAGTTTTAATAAGAGTTTTGAGGGCGTAGAATTTGACTTTCGTATCTCAACCTTACCTTTGCAAAAAGGCGAAAG
TGTGGTGCTTAGAATTTTAAGGCAGGATTTGGAGCTTTTAAGCCTTGAAAATTTGCATTTTTCTAAGCAAAATTTAGCCT
TAATTACAAAAAATATCCAAAAACCTTTTGGTATGATTTTACTCACAGGACCCACAGGTAGCGGTAAAAGCACGACTTTA
TACGCTTGTCTAAAAAGTCTTGCTTGTGTGGAGAAAAAAATCATCACCGCAGAAGATCCCATAGAATATAAAATGCCTCA
AATTCAACAAATCGCACTTAATTCTAAAGCTGGGCTTGATTTTAGCAATGCCTTAAGGGCGATTTTAAGGCAGGATCCTG
ATATCATTATGGTCGGTGAAATCCGCGATGAAGAAAGTCTTGATATAGCTTTAAAGGGGGCGCAAACAGGACATTTAATC
CTTAGCACACTCCATACAAATGATGCTCTTTCTACCATAGAACGCTTGCTTGATATGAGGGCAAAGCCCTATTTAATAGC
CTCTTCGCTTAATCTCATCATCGCTCAACGCCTTGCAAGAAGGCTTTGTCCCTATTGTAAAATGCAAAAGCTTGAAGATG
AGGAAGTATTTTATGAGGCTAAGGGTTGTGAAAAGTGCCATTTTAGTGGCTTTTGGGGGAGGGAGTTGTTAGAAGAGTGT
TTGGAGCTTGATGAGGGTTTAAAAGAGCTAATTCGTAAAAATGCTAGTAAAAATGAGCTTTTAACTTACGCTAGAAAACA
AGGCTTTTTAACGATGTTTGAGCTAGGACTTAAAAAGGCAAAAAGTGGCATAATAAGTCTTAATGAGCTTATGAGGGTAG
TGGGGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(176-441)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(43-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

54.297

95.701

0.52