Detailed information NTG0448139

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: CUP3940_RS00485
• Genome accession: NZ_CP053849
• Coordinates: 93938..95119 (-)
• Length: 393 a.a.
• NCBI ID: WP_176318110.1
• Uniprot ID: -
• Organism: Campylobacter upsaliensis RM3940
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 88938..100119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CUP3940_RS00465 (CUP3940_0090)	-	89392..90207 (+)	816	WP_115632361.1	thiamine-phosphate kinase	-
CUP3940_RS00470 (CUP3940_0091)	truD	90176..91297 (+)	1122	WP_115635418.1	tRNA pseudouridine(13) synthase TruD	-
CUP3940_RS00475 (CUP3940_0092)	-	91352..91960 (+)	609	WP_115632360.1	hypothetical protein	-
CUP3940_RS00480 (CUP3940_0093)	-	92076..93911 (+)	1836	WP_176318109.1	flagellin	-
CUP3940_RS00485 (CUP3940_0094)	ctsF	93938..95119 (-)	1182	WP_176318110.1	type II secretion system F family protein	Machinery gene
CUP3940_RS00490 (CUP3940_0095)	ctsE	95116..96723 (-)	1608	WP_115635414.1	GspE/PulE family protein	Machinery gene
CUP3940_RS00495 (CUP3940_0096)	-	96720..97286 (-)	567	WP_115635413.1	CDC27 family protein	-
CUP3940_RS00500 (CUP3940_0097)	-	97288..97890 (-)	603	WP_176318111.1	hypothetical protein	-
CUP3940_RS00505 (CUP3940_0098)	ctsD	97883..99289 (-)	1407	WP_115632354.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CUP3940_RS00510 (CUP3940_0099)	-	99267..99566 (-)	300	WP_004275339.1	hypothetical protein	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 44830.50 Da
• Isoelectric Point: 9.8082

>NTDB_id=448139 CUP3940_RS00485 WP_176318110.1 93938..95119(-) (ctsF) [Campylobacter upsaliensis RM3940]
MRIYELYYLKNQQKLKKIIKAKNLNTAQTMALKQNLQIISLKELKKQSRIKISDTLFCAFFKEFALLLNAGLSIKEALNL
MSENSSKHLKDAAKELSANLNSGQSLSVAFGNLALNLNLSELSLIKMGEKTGNLAHIFSQIAELRTKLILNKKRFKKAIH
YPCLVFLALFGAFLFLMFFVVPEFLDIFESLGANLPLMTQILLNIYVFLSENYLSLICVFVGFLSGFIVIYKKSVKFAFW
VDLMLLKFPFFSHFILYHQNYYFFMIFSLLLQSGNALSQAFHLASSSVENKFLKEKFKQIELSLGQGLELSLAFKKVGIF
DELVISLLHSAMKSGTLDLLSAKIAHFYEEKQEDFIEIFLKFLEPLMTLLVGILVLFLALGIFLPMWELSSGV

Nucleotide

• Length: 1182 bp

>NTDB_id=448139 CUP3940_RS00485 WP_176318110.1 93938..95119(-) (ctsF) [Campylobacter upsaliensis RM3940]
GTGAGAATTTATGAGCTTTATTATCTTAAAAATCAGCAAAAATTAAAGAAAATCATCAAGGCAAAAAATCTTAACACCGC
CCAAACTATGGCTTTGAAACAAAATTTGCAAATTATAAGCTTAAAGGAGCTTAAAAAGCAAAGTAGGATTAAAATTAGCG
ATACGCTTTTTTGTGCTTTTTTTAAAGAATTTGCCCTTTTGCTTAATGCGGGATTAAGCATTAAGGAAGCTTTAAATTTG
ATGAGTGAAAACTCTAGCAAACATTTAAAAGACGCGGCAAAAGAATTAAGTGCGAATTTAAATTCTGGGCAGAGTTTAAG
TGTGGCATTTGGTAATTTAGCGTTAAATTTAAACTTGAGCGAATTAAGCCTCATTAAAATGGGCGAAAAGACGGGAAATT
TGGCACATATTTTTTCTCAAATTGCAGAATTAAGAACAAAGCTGATTTTAAACAAAAAGCGTTTTAAAAAGGCGATTCAC
TATCCTTGTTTAGTTTTTTTGGCACTTTTTGGAGCATTTTTATTTTTAATGTTTTTTGTTGTGCCTGAATTTTTGGACAT
TTTTGAAAGTTTGGGAGCAAATTTACCTTTAATGACGCAAATTTTACTTAATATTTATGTATTTTTAAGTGAGAATTATT
TGTCTTTGATTTGCGTTTTTGTAGGCTTTTTGAGCGGATTTATTGTCATTTATAAAAAAAGTGTCAAATTTGCTTTTTGG
GTGGATTTGATGCTTTTAAAGTTTCCTTTTTTCTCGCATTTTATTCTTTATCATCAAAATTATTATTTTTTTATGATTTT
CTCTTTACTTTTACAAAGCGGTAATGCCCTCTCACAAGCCTTTCATTTGGCAAGTTCTAGTGTGGAAAATAAATTTTTAA
AAGAGAAATTTAAGCAGATCGAGCTTTCTTTGGGGCAGGGATTAGAGCTTTCTTTAGCTTTTAAAAAGGTGGGGATTTTT
GATGAGCTTGTCATTTCTTTACTTCATAGTGCGATGAAAAGTGGAACGCTAGATCTTCTAAGTGCTAAAATTGCCCATTT
TTACGAAGAAAAGCAAGAGGATTTTATTGAGATATTTTTAAAATTCTTAGAGCCCTTGATGACTTTGCTTGTGGGAATTT
TGGTTTTATTTTTAGCTTTAGGGATTTTTTTGCCGATGTGGGAGCTAAGTAGCGGAGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (266-385)

• Type II secretion system (T2SS), protein F (T2SSF) (60-182)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	51.399	100	0.514