Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   CCORG_RS06490 Genome accession   NZ_CP053842
Coordinates   1264185..1264448 (-) Length   87 a.a.
NCBI ID   WP_172658566.1    Uniprot ID   -
Organism   Campylobacter corcagiensis strain LMG 27932     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1259185..1269448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCORG_RS06475 (CCORG_1285) cas7b 1260714..1261355 (-) 642 WP_051487291.1 type I-B CRISPR-associated protein Cas7/Csh2 -
  CCORG_RS08970 - 1261348..1261794 (-) 447 WP_025803943.1 hypothetical protein -
  CCORG_RS08975 - 1261809..1262381 (-) 573 WP_025803944.1 TM1802 family CRISPR-associated protein -
  CCORG_RS08980 - 1262384..1262665 (-) 282 WP_025803945.1 hypothetical protein -
  CCORG_RS08985 - 1262705..1263007 (-) 303 WP_025803946.1 hypothetical protein -
  CCORG_RS09055 - 1263231..1263353 (-) 123 WP_265092857.1 hypothetical protein -
  CCORG_RS06490 (CCORG_1287) Cj0011c 1264185..1264448 (-) 264 WP_172658566.1 helix-hairpin-helix domain-containing protein Machinery gene
  CCORG_RS08990 - 1264905..1265032 (-) 128 Protein_1272 IS1595 family transposase -
  CCORG_RS06495 (CCORG_1288) - 1265247..1265423 (-) 177 WP_172658545.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9744.43 Da        Isoelectric Point: 9.9863

>NTDB_id=448092 CCORG_RS06490 WP_172658566.1 1264185..1264448(-) (Cj0011c) [Campylobacter corcagiensis strain LMG 27932]
MKKLLLFLVFSFSMLFGAVNINTASKEELMTLKGIGEGKAKAIIEYREKNKFDKPEDIKNVKGIGDKVYEGIKDDIKTSG
NTEIKSK

Nucleotide


Download         Length: 264 bp        

>NTDB_id=448092 CCORG_RS06490 WP_172658566.1 1264185..1264448(-) (Cj0011c) [Campylobacter corcagiensis strain LMG 27932]
ATGAAAAAGTTACTACTATTTTTAGTATTTAGTTTTTCAATGTTATTTGGAGCTGTTAATATAAATACAGCATCAAAAGA
GGAGCTTATGACTTTAAAAGGTATAGGTGAGGGTAAAGCTAAGGCTATAATTGAATATAGAGAGAAAAATAAATTTGATA
AGCCTGAAGACATTAAAAATGTAAAAGGAATAGGCGATAAGGTTTATGAAGGCATAAAGGATGATATTAAAACAAGTGGA
AATACAGAGATAAAAAGTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.338

88.506

0.552
  comE Neisseria gonorrhoeae MS11

48.718

89.655

0.437
  comE Neisseria gonorrhoeae MS11

48.718

89.655

0.437
  comE Neisseria gonorrhoeae MS11

48.718

89.655

0.437
  comE Neisseria gonorrhoeae MS11

48.718

89.655

0.437
  comEA Bacillus subtilis subsp. subtilis str. 168

55.932

67.816

0.379
  comEA Vibrio cholerae C6706

64

57.471

0.368
  comEA Vibrio cholerae strain A1552

64

57.471

0.368
  comEA Vibrio parahaemolyticus RIMD 2210633

53.333

68.966

0.368