Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   HPY15_RS01400 Genome accession   NZ_CP053800
Coordinates   301437..302069 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain SO5Y     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 296437..307069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS01380 (HPY15_01380) - 296584..297795 (+) 1212 WP_175235518.1 aspartate aminotransferase family protein -
  HPY15_RS01385 (HPY15_01385) astA 297938..298957 (+) 1020 WP_000962050.1 arginine N-succinyltransferase -
  HPY15_RS01390 (HPY15_01390) astD 298967..300424 (+) 1458 WP_046126017.1 succinylglutamate-semialdehyde dehydrogenase -
  HPY15_RS01395 (HPY15_01395) - 300567..301358 (+) 792 WP_000189095.1 DUF1338 domain-containing protein -
  HPY15_RS01400 (HPY15_01400) crp 301437..302069 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  HPY15_RS01405 (HPY15_01405) - 302312..303181 (-) 870 WP_001274667.1 phosphoribulokinase -
  HPY15_RS01410 (HPY15_01410) - 303278..303487 (-) 210 WP_001888622.1 YheU family protein -
  HPY15_RS01415 (HPY15_01415) - 303616..304605 (-) 990 WP_046126411.1 hydrolase -
  HPY15_RS01420 (HPY15_01420) - 304602..305087 (-) 486 WP_001278732.1 TIGR02444 family protein -
  HPY15_RS01425 (HPY15_01425) - 305088..307004 (-) 1917 WP_046126412.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=447454 HPY15_RS01400 WP_000242749.1 301437..302069(-) (crp) [Vibrio cholerae strain SO5Y]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=447454 HPY15_RS01400 WP_000242749.1 301437..302069(-) (crp) [Vibrio cholerae strain SO5Y]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAGTTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGATGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAAAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467