Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GE021_RS02055 Genome accession   NZ_CP053792
Coordinates   404468..406447 (+) Length   659 a.a.
NCBI ID   WP_125074788.1    Uniprot ID   A0A3P5XRW0
Organism   Streptococcus canis strain HL_77_1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 399468..411447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS02040 (GE021_002040) sufB 399694..401112 (+) 1419 WP_003046659.1 Fe-S cluster assembly protein SufB -
  GE021_RS02045 (GE021_002045) - 401543..402724 (-) 1182 WP_172758320.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GE021_RS02050 (GE021_002050) pbp3 402899..404137 (-) 1239 WP_125074787.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GE021_RS02055 (GE021_002055) amiA 404468..406447 (+) 1980 WP_125074788.1 peptide ABC transporter substrate-binding protein Regulator
  GE021_RS02060 (GE021_002060) amiC 406513..408015 (+) 1503 WP_125074789.1 ABC transporter permease Regulator
  GE021_RS02065 (GE021_002065) amiD 408015..408941 (+) 927 WP_125074790.1 oligopeptide ABC transporter permease OppC Regulator
  GE021_RS02070 (GE021_002070) amiE 408950..410020 (+) 1071 WP_125074791.1 ABC transporter ATP-binding protein Regulator
  GE021_RS02075 (GE021_002075) amiF 410013..410936 (+) 924 WP_093999413.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72445.82 Da        Isoelectric Point: 4.9490

>NTDB_id=447257 GE021_RS02055 WP_125074788.1 404468..406447(+) (amiA) [Streptococcus canis strain HL_77_1]
MKKSKWLATLGVAVLSVSVLAACGSKNASGGSDATKTYKYVFVNDPKSLDYILSNGGGTTDVATQMVDGLLENDKYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDGKSEALYVVEDSIKNLKAYKNGEVDFKEV
GIKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNEKFLKSQGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFTVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LDDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGIKAGESKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVTKAVPFSGAFAWAGAKGPASVYYYKGMKLQDKPVTAKQYEKAKEKWLK
AKAKSNAEYAEKLADHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=447257 GE021_RS02055 WP_125074788.1 404468..406447(+) (amiA) [Streptococcus canis strain HL_77_1]
ATGAAGAAAAGTAAATGGTTAGCAACTCTAGGTGTTGCCGTATTATCAGTATCTGTCTTAGCAGCCTGCGGTAGCAAAAA
TGCTTCAGGTGGTTCAGATGCGACAAAAACGTACAAATATGTTTTTGTTAATGATCCAAAATCATTGGACTATATTTTGT
CTAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTCGATGGTCTTTTGGAAAATGACAAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTACACCCTTCGTGATGGTGTCTCTTGGTA
CACTGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCAGTGGATGGCAAGT
CTGAAGCCTTATATGTTGTTGAAGATTCTATAAAAAATCTAAAAGCTTATAAAAATGGTGAAGTCGATTTCAAAGAAGTT
GGTATTAAAGCCCTTGACGACAAAACCGTTCAATACACCTTGAACAAACCTGAAAGTTATTGGAACTCCAAAACAACTTA
CAGTGTTCTTTTCCCAGTCAATGAAAAATTCTTGAAATCACAAGGTAAAGATTTTGGAACAACAGACCCATCGTCAATCC
TAGTTAACGGTGCTTACTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTATTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGCTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCACTGTTGCACGACTTTATCCAAATGACCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGCATGTTGACTGGGGACATCCGTCATTTAACATGGAACTTGAACCGTACGTCCTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCTGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCCTTTGACCG
CGCGTCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAGGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACAATTGGGGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACTATGGGTGATGAGTGGAAAGACGTTAAC
TTAGACGATGCTCAAGATGGATTTTATAATCCAGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTCTTACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAAGCAAACGCAGCAACTGTTCAGGAAGCCCAATCTT
TCAAACAATCCGTTGAAGCATCTCTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATCATTTCATCATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTTGGAATTAAAGCAGGTGAAA
GCAAAGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTTTACTTGATGAAGCAGCAGCGATTACAGACGACAAC
GATGCGCGCTACAAGGCTTACGCAAAAGCACAAGCCTACCTTACTGATAGTGCCGTAGATATTCCAGTTGTGGCATTGGG
TGGCACTCCTCGAGTTACTAAAGCTGTTCCATTTAGCGGTGCCTTTGCCTGGGCAGGAGCTAAAGGTCCTGCTTCTGTAT
ATTATTACAAAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAA
GCAAAGGCTAAGTCAAACGCAGAATATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5XRW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.131

100

0.514
  amiA3 Streptococcus thermophilus LMG 18311

50.528

100

0.508
  amiA3 Streptococcus thermophilus LMD-9

50.226

100

0.505