Detailed information NTG0447261

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: GE021_RS02075
• Genome accession: NZ_CP053792
• Coordinates: 410013..410936 (+)
• Length: 307 a.a.
• NCBI ID: WP_093999413.1
• Uniprot ID: A0A3P5XSN6
• Organism: Streptococcus canis strain HL_77_1
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	411123..411596	410013..410936	flank	187

Gene organization within MGE regions

Location: 410013..411596

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE021_RS02075 (GE021_002075)	amiF	410013..410936 (+)	924	WP_093999413.1	ABC transporter ATP-binding protein	Regulator
GE021_RS02080 (GE021_002080)	tnpA	411123..411596 (+)	474	WP_172774159.1	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34664.94 Da
• Isoelectric Point: 7.1463

>NTDB_id=447261 GE021_RS02075 WP_093999413.1 410013..410936(+) (amiF) [Streptococcus canis strain HL_77_1]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKTMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELVVYNPDQHDYTVDKPSMVEIKPNHFVWANQAEIKKYQKEL

Nucleotide

• Length: 924 bp

>NTDB_id=447261 GE021_RS02075 WP_093999413.1 410013..410936(+) (amiF) [Streptococcus canis strain HL_77_1]
ATGTCTGAGAAGTTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCGGTTAAGAA
CGCCAATTTCTTCATTAAAAAAGGGGAAACCTTCTCTTTAGTTGGAGAATCTGGTAGCGGAAAAACAACCATTGGTCGGG
CCATTATTGGCTTGAATGATACCAGTTCAGGGCAAATTCTTTACGATGGTAAAGTAATTAATGGTAGAAAATCTAAATCA
GAAGCCAATGAACTTATACGTAAAATTCAAATGATTTTTCAAGATCCTGCTGCTAGTTTAAATGAACGTGCAACTGTTGA
TTATATCATTTCGGAAGGTCTCTATAATTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGACGATGA
TGGCTGAAGTTGGCCTGCTGTCAGAGCATCTGACTCGCTACCCACATGAATTTTCGGGAGGTCAACGCCAGCGGATTGGT
ATTGCCAGAGCCTTAGTGATGAATCCTGAATTTGTTATTGCTGATGAGCCTATCTCAGCTTTAGATGTCTCTGTTCGAGC
ACAAGTCCTAAATCTTCTTAAAAGAATGCAGGCAGAAAAAGGGCTCACTTATCTTTTCATCGCCCATGACCTTTCCGTTG
TTCGATTCATTTCAGATCGTATTGCGGTTATTCACAAAGGGGTTATTGTGGAGGTTGCAGAAACAGAAGAATTATTTAAT
AATCCTATCCATCCTTACACAAAATCTCTGCTGTCAGCCGTTCCTATTCCTGATCCGATTTTAGAACGTCAAAAAGAACT
TGTTGTTTATAATCCAGATCAGCATGATTATACCGTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTAAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

3D structure

• AlphaFold DB: A0A3P5XSN6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	82.68	99.674	0.824
amiF	Streptococcus thermophilus LMD-9	82.353	99.674	0.821
amiF	Streptococcus salivarius strain HSISS4	82.353	99.674	0.821