Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GE021_RS02070 Genome accession   NZ_CP053792
Coordinates   408950..410020 (+) Length   356 a.a.
NCBI ID   WP_125074791.1    Uniprot ID   A0A3P5Y5D1
Organism   Streptococcus canis strain HL_77_1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 403950..415020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS02055 (GE021_002055) amiA 404468..406447 (+) 1980 WP_125074788.1 peptide ABC transporter substrate-binding protein Regulator
  GE021_RS02060 (GE021_002060) amiC 406513..408015 (+) 1503 WP_125074789.1 ABC transporter permease Regulator
  GE021_RS02065 (GE021_002065) amiD 408015..408941 (+) 927 WP_125074790.1 oligopeptide ABC transporter permease OppC Regulator
  GE021_RS02070 (GE021_002070) amiE 408950..410020 (+) 1071 WP_125074791.1 ABC transporter ATP-binding protein Regulator
  GE021_RS02075 (GE021_002075) amiF 410013..410936 (+) 924 WP_093999413.1 ABC transporter ATP-binding protein Regulator
  GE021_RS02080 (GE021_002080) tnpA 411123..411596 (+) 474 WP_172774159.1 IS200/IS605 family transposase -
  GE021_RS02085 (GE021_002085) tnpA 411877..412346 (+) 470 Protein_377 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39738.77 Da        Isoelectric Point: 5.6707

>NTDB_id=447260 GE021_RS02070 WP_125074791.1 408950..410020(+) (amiE) [Streptococcus canis strain HL_77_1]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHSKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIIGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPEVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=447260 GE021_RS02070 WP_125074791.1 408950..410020(+) (amiE) [Streptococcus canis strain HL_77_1]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTTGATGTGCGGGATCGTGTTTTAACGGC
GATTCGTAACGTCTCACTGGAACTTGTCGAAGGAGAAGTGCTTGCTTTTGTAGGGGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGAATGTTAGAATCCAATGGACGCATTGCCAATGGTTCTATTGTTTATCGTGGACAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCGAAAATCCGTGGTTCAAAGATTGCGACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGTCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGCCATAGCAAGGCAA
AAGAAATGGCGCTTGATTACATGAATAAAGTAGGGATTCCAAACGCTAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGCCAACGTATTGTTATCGCAATTGCTTTAGCCTGTCGTCCAGATATTCTTATCTGTGATGAGCCTAC
AACAGCCCTTGATGTAACCATTCAAGCTCAAATCATTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATCACACATGACTTAGGTGTTGTCGCAAGTATTGCAGACAAAGTAGCTGTCATGTATGCAGGTGAAATTGTCGAA
TTCGGTACCGTTGAAGAAATTTTCTATGACCCACGCCACCCCTATACGTGGAGTCTATTGTCAAGCTTACCGCAATTAGC
TAATGAATCAGGAGAACTTTATTCCATTCCAGGAACTCCTCCATCGCTTTACTCGCCAATTATCGGAGATGCCTTTGCCC
TTCGCTCAGAATATGCTATGGTCTTGGATTTTGAGGAAACACCACCTGCTATCAGTGTTTCTGATACCCATTGGGCTAAA
ACATGGTTATTACACCCCGAGGCTCCAAAAGTTCAAAAGCCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAAGAA
GATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5Y5D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.5

100

0.784
  amiE Streptococcus thermophilus LMG 18311

76.389

100

0.772
  amiE Streptococcus thermophilus LMD-9

76.389

100

0.772
  oppD Streptococcus mutans UA159

57.567

94.663

0.545