Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GE021_RS02060 Genome accession   NZ_CP053792
Coordinates   406513..408015 (+) Length   500 a.a.
NCBI ID   WP_125074789.1    Uniprot ID   A0A3P5Y8G8
Organism   Streptococcus canis strain HL_77_1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 401513..413015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS02045 (GE021_002045) - 401543..402724 (-) 1182 WP_172758320.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GE021_RS02050 (GE021_002050) pbp3 402899..404137 (-) 1239 WP_125074787.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GE021_RS02055 (GE021_002055) amiA 404468..406447 (+) 1980 WP_125074788.1 peptide ABC transporter substrate-binding protein Regulator
  GE021_RS02060 (GE021_002060) amiC 406513..408015 (+) 1503 WP_125074789.1 ABC transporter permease Regulator
  GE021_RS02065 (GE021_002065) amiD 408015..408941 (+) 927 WP_125074790.1 oligopeptide ABC transporter permease OppC Regulator
  GE021_RS02070 (GE021_002070) amiE 408950..410020 (+) 1071 WP_125074791.1 ABC transporter ATP-binding protein Regulator
  GE021_RS02075 (GE021_002075) amiF 410013..410936 (+) 924 WP_093999413.1 ABC transporter ATP-binding protein Regulator
  GE021_RS02080 (GE021_002080) tnpA 411123..411596 (+) 474 WP_172774159.1 IS200/IS605 family transposase -
  GE021_RS02085 (GE021_002085) tnpA 411877..412346 (+) 470 Protein_377 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56150.41 Da        Isoelectric Point: 10.1683

>NTDB_id=447258 GE021_RS02060 WP_125074789.1 406513..408015(+) (amiC) [Streptococcus canis strain HL_77_1]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKADYENLTFQRMGYINYFSSKELKDNAS
KVDNSVTTEATSANKAIYEKYIDSLGNGWQLKRFPVSKKFYATRHIPIYERVWNFFSNLVVIDHPWKIQDKDNPNLARYI
RLENDKSIGWALVGSGTQHKYLVYANGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASNPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGIPASIILTIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIISLLLG
DIAMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=447258 GE021_RS02060 WP_125074789.1 406513..408015(+) (amiC) [Streptococcus canis strain HL_77_1]
ATGAAAAAATACATCTTAAACCGTATCTTACGATCGTTAGTGTCGGTAGTTTTGGTAACGGCCTTAACATACACCATCGT
ATATACTCTAGTCCCTGTCGGTCTTATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACGCCAGACAAAAAGG
CTGATTACGAAAACTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAATAGTGTAACAACAGAAGCAACTAGTGCTAACAAGGCTATTTATGAGAAATATATTGATTCGCTTGGCAA
TGGTTGGCAGTTAAAACGCTTCCCTGTCAGCAAAAAATTCTATGCTACTCGTCATATTCCTATTTACGAACGTGTTTGGA
ACTTCTTCTCAAACCTAGTTGTTATTGATCACCCTTGGAAGATCCAAGACAAGGACAATCCTAATCTAGCTAGATATATC
CGCCTTGAAAATGATAAATCGATTGGTTGGGCTTTAGTGGGGTCAGGGACACAACACAAATACCTTGTCTATGCTAACGG
TAAGTTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGTAACATTCCAGTTC
TTCAAGTCATTTCACAAGGACAAGGTCGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTAACTAAGAAATCGTCA
GTGGATATTTATAGCCGTAGCTACAAAAATCCAAAATCTTTGGATGATATTACCAAGGTAAATTATGGTAAGGGAGATTC
CTACACTAAAACTATTAATAATTATGTGGATCCTTCAATGATTCATAATTCCTTTGTCATTGGATTTTTTGGCGTTATGT
TTTCTTATATTGTTGGTTTACCACTTGGTTTATTTATGGCTCGCTTTAAAAATACCTACTTTGACCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTGATCTATGTTGTTCGCTTTCTAGGAAGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGAGCATCTAACCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACAGTTATCTGGTTCCGTCGCTACCTTGTTGACCTTCAGGCCAGTGACTGGGTGCGTTTTGCGCGCTCAAAAGGC
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTTAAAAATGCCATGGTCCCAATTGTGTCAGGGATTCCGGCAAGTAT
TATTCTTACCATCGGTGGAGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTGATTGATTCTA
TTAAATCAGCCAACAACTCAATGATTGTTGGATTAACCTTTATCTTTACCGTCTTGTCAATTATCTCACTCTTACTAGGA
GATATTGCTATGACACTTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5Y8G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.4

100

0.604
  amiC Streptococcus thermophilus LMD-9

60

100

0.6
  amiC Streptococcus thermophilus LMG 18311

60

100

0.6