Detailed information NTG0447259

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: GE021_RS02065
• Genome accession: NZ_CP053792
• Coordinates: 408015..408941 (+)
• Length: 308 a.a.
• NCBI ID: WP_125074790.1
• Uniprot ID: A0A3P5Y1N2
• Organism: Streptococcus canis strain HL_77_1
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 403015..413941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE021_RS02055 (GE021_002055)	amiA	404468..406447 (+)	1980	WP_125074788.1	peptide ABC transporter substrate-binding protein	Regulator
GE021_RS02060 (GE021_002060)	amiC	406513..408015 (+)	1503	WP_125074789.1	ABC transporter permease	Regulator
GE021_RS02065 (GE021_002065)	amiD	408015..408941 (+)	927	WP_125074790.1	oligopeptide ABC transporter permease OppC	Regulator
GE021_RS02070 (GE021_002070)	amiE	408950..410020 (+)	1071	WP_125074791.1	ABC transporter ATP-binding protein	Regulator
GE021_RS02075 (GE021_002075)	amiF	410013..410936 (+)	924	WP_093999413.1	ABC transporter ATP-binding protein	Regulator
GE021_RS02080 (GE021_002080)	tnpA	411123..411596 (+)	474	WP_172774159.1	IS200/IS605 family transposase	-
GE021_RS02085 (GE021_002085)	tnpA	411877..412346 (+)	470	Protein_377	IS200/IS605 family transposase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34816.83 Da
• Isoelectric Point: 9.2024

>NTDB_id=447259 GE021_RS02065 WP_125074790.1 408015..408941(+) (amiD) [Streptococcus canis strain HL_77_1]
METIDKSKFRFVERDSRASEVIDAPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNADYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVVLGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide

• Length: 927 bp

>NTDB_id=447259 GE021_RS02065 WP_125074790.1 408015..408941(+) (amiD) [Streptococcus canis strain HL_77_1]
ATGGAAACGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTAGAGCCTCCGAAGTAATTGATGCCCCAGCTTA
TTCTTATTGGAAGTCAGTATTCCGTCAATTTTTCTCTAAAAAATCAACAATTTTCATGTTAATGATTTTAGTGACAATTT
TATTGATGAGTTTTATTTACCCAATGTTTGCCAACTATGACTTTGGTGATGTAAGCAATATTAACGACTTTTCAAAACGC
TATATTTGGCCAAATGCTGACTATTGGTTTGGAACAGATAAAAATGGTCAATCCTTATTTGATGGTGTCTGGTATGGTGC
CCGTAACTCTATCTTAATTTCTGTTATTGCAACACTGATTAACGTCACCATTGGGGTTGTTTTAGGTGCTATTTGGGGAG
TTTCCAAAGCATTTGATAAAGTTATGATTGAAATTTATAACGTTATTTCAAATATCCCTTCCATGCTCATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGTTTCTGGAATTTGATTTTAGCTTTCTGTATTACTGGCTGGATTGGTGTTGCCTACTC
CATTCGTGTTCAGATTTTGCGTTACCGTGATTTGGAATATAACCTTGCTAGTCAAACCTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTACCTCAATTGGTTTCAGTTATTATGACCATGTTGTCACAAATGCTACCAGTTTATGTATCC
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACTACCACTCCAAGTCTAGGACGTTTGATTGCTAATTATTC
AAGCAATTTAACAACAAATGCCTACCTCTTCTGGATTCCTTTAGTTACTTTGATTTTAGTATCGTTACCATTGTATATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-72)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-305)

3D structure

• AlphaFold DB: A0A3P5Y1N2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus salivarius strain HSISS4	74.026	100	0.74
amiD	Streptococcus thermophilus LMG 18311	73.052	100	0.731
amiD	Streptococcus thermophilus LMD-9	73.052	100	0.731