Detailed information NTG0447250

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: GE021_RS00840
• Genome accession: NZ_CP053792
• Coordinates: 144273..144713 (+)
• Length: 146 a.a.
• NCBI ID: WP_125073626.1
• Uniprot ID: -
• Organism: Streptococcus canis strain HL_77_1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 139273..149713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE021_RS00810 (GE021_000810)	-	140947..141312 (+)	366	WP_125073632.1	DUF1033 family protein	-
GE021_RS00815 (GE021_000815)	comYA	141399..142340 (+)	942	WP_125073631.1	competence type IV pilus ATPase ComGA	Machinery gene
GE021_RS00820 (GE021_000820)	comYB	142273..143307 (+)	1035	WP_172774157.1	competence type IV pilus assembly protein ComGB	Machinery gene
GE021_RS00825 (GE021_000825)	comYC	143310..143636 (+)	327	WP_125073629.1	competence type IV pilus major pilin ComGC	Machinery gene
GE021_RS00830 (GE021_000830)	comGD	143611..144039 (+)	429	WP_260436826.1	competence type IV pilus minor pilin ComGD	-
GE021_RS00835 (GE021_000835)	comGE	144017..144292 (+)	276	WP_125073627.1	competence type IV pilus minor pilin ComGE	-
GE021_RS00840 (GE021_000840)	comYF	144273..144713 (+)	441	WP_125073626.1	competence type IV pilus minor pilin ComGF	Machinery gene
GE021_RS00845 (GE021_000845)	comGG	144691..145071 (+)	381	WP_125073625.1	competence type IV pilus minor pilin ComGG	-
GE021_RS00850 (GE021_000850)	comYH	145121..146074 (+)	954	WP_125073624.1	class I SAM-dependent methyltransferase	Machinery gene
GE021_RS00855 (GE021_000855)	-	146133..147329 (+)	1197	WP_093998734.1	acetate kinase	-
GE021_RS00860 (GE021_000860)	-	147649..147855 (+)	207	WP_125073623.1	helix-turn-helix transcriptional regulator	-
GE021_RS11180	-	148013..148450 (+)	438	WP_164406320.1	hypothetical protein	-
GE021_RS00870 (GE021_000870)	proC	148599..149369 (-)	771	WP_125073622.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 146 a.a.
• Molecular weight: 16939.52 Da
• Isoelectric Point: 10.5817

>NTDB_id=447250 GE021_RS00840 WP_125073626.1 144273..144713(+) (comYF) [Streptococcus canis strain HL_77_1]
MNKRTNRVRAFTFLEALIALLVISGSLLVYQGLTKTLLKHSHYLANHDQDHWLLFSQQLREELDGARFQKVTNNKLYIKK
GKKTLALGQSKSHDFRKSASNGQGYQPMLFGLSHTKIQADQFYVSIKLKWKSGLERTFYYAFQDQP

Nucleotide

• Length: 441 bp

>NTDB_id=447250 GE021_RS00840 WP_125073626.1 144273..144713(+) (comYF) [Streptococcus canis strain HL_77_1]
TTGAACAAAAGGACAAATAGGGTTAGGGCGTTTACTTTTTTAGAAGCTTTAATTGCTCTGCTCGTTATATCAGGATCGCT
ATTAGTGTATCAAGGGCTAACTAAAACTCTCCTCAAGCACAGCCACTATCTGGCTAATCATGACCAAGATCACTGGCTTT
TGTTTTCCCAGCAGTTACGTGAAGAATTAGATGGAGCTAGGTTTCAAAAAGTAACAAATAACAAACTCTATATTAAAAAG
GGAAAGAAAACCTTAGCTTTAGGTCAATCTAAAAGCCATGATTTTCGGAAATCAGCTAGTAATGGTCAAGGTTACCAACC
CATGTTATTTGGCCTGTCTCATACTAAAATTCAGGCAGACCAGTTCTATGTTAGCATTAAGTTAAAATGGAAAAGTGGCT
TAGAAAGGACTTTTTATTATGCGTTTCAAGACCAACCTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (40-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	50.345	99.315	0.5
comYF	Streptococcus mutans UA140	49.655	99.315	0.493
comGF	Lactococcus lactis subsp. cremoris KW2	45.652	94.521	0.432
comGF/cglF	Streptococcus pneumoniae TIGR4	45.255	93.836	0.425
comGF/cglF	Streptococcus pneumoniae R6	45.255	93.836	0.425
comGF/cglF	Streptococcus pneumoniae Rx1	45.255	93.836	0.425
comGF/cglF	Streptococcus pneumoniae D39	45.255	93.836	0.425
comGF/cglF	Streptococcus mitis NCTC 12261	43.796	93.836	0.411
comGF/cglF	Streptococcus mitis SK321	43.796	93.836	0.411