Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GE022_RS01875 Genome accession   NZ_CP053790
Coordinates   356502..358481 (+) Length   659 a.a.
NCBI ID   WP_164405048.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 351502..363481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS01855 (GE022_001855) sufB 351724..353142 (+) 1419 WP_003046659.1 Fe-S cluster assembly protein SufB -
  GE022_RS01865 (GE022_001860) - 353577..354758 (-) 1182 WP_172758320.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GE022_RS01870 (GE022_001865) pbp3 354933..356171 (-) 1239 WP_164405047.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GE022_RS01875 (GE022_001870) amiA 356502..358481 (+) 1980 WP_164405048.1 peptide ABC transporter substrate-binding protein Regulator
  GE022_RS01880 (GE022_001875) amiC 358547..360049 (+) 1503 WP_164405049.1 ABC transporter permease Regulator
  GE022_RS01885 (GE022_001880) amiD 360049..360975 (+) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  GE022_RS01890 (GE022_001885) amiE 360984..362054 (+) 1071 WP_093999414.1 ABC transporter ATP-binding protein Regulator
  GE022_RS01895 (GE022_001890) amiF 362047..362970 (+) 924 WP_093999413.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72373.72 Da        Isoelectric Point: 4.9490

>NTDB_id=447202 GE022_RS01875 WP_164405048.1 356502..358481(+) (amiA) [Streptococcus canis strain HL_77_2]
MKKSKWLATLGVAVLSVSVLAACGSKNASGGSDATKTYKYVFVNDPKSLDYILSNGGGTTDVATQMVDGLLENDKYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDGKSEALYVVEDSIKNLKAYKNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNEKFLKSQGKEFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFTVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVSIGENDFGSEVEKDLATMGDEWKDVN
LDDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGVKAGESKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVSKAIPFSGAFAWAGAKGPASVYYYKGMKLQDKPVTAKQFEKAKEKWLK
AKAKSNADYAEKLADHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=447202 GE022_RS01875 WP_164405048.1 356502..358481(+) (amiA) [Streptococcus canis strain HL_77_2]
ATGAAGAAAAGTAAATGGTTAGCAACTCTAGGTGTTGCCGTATTATCAGTATCTGTCTTAGCAGCCTGCGGTAGTAAAAA
TGCTTCAGGTGGTTCAGATGCGACAAAAACGTACAAATATGTTTTTGTTAATGATCCAAAATCATTGGACTATATTTTGT
CTAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTCGATGGTCTTTTGGAAAATGACAAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTACACCCTTCGTGATGGTGTCTCTTGGTA
CACTGCTGATGGTGAAGAATATGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCAGTGGATGGCAAGT
CTGAAGCTTTATATGTTGTTGAAGATTCCATCAAAAACCTAAAAGCTTATAAAAATGGTGAAGTCGATTTCAAAGAGGTT
GGTGTTAAAGCCCTTGACGACAAAACCGTTCAATACACCTTGAACAAACCTGAAAGTTATTGGAACTCCAAAACAACTTA
CAGTGTTCTTTTCCCAGTCAATGAAAAATTCTTGAAATCACAAGGTAAAGAGTTTGGGACAACAGATCCATCATCAATCC
TTGTTAATGGTGCTTATTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCTGATCCTGGTTCTTTCTACAAGAACTTCGA
CAAGGGTGAGTTCACTGTTGCACGACTTTACCCAAATGATCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGAATGTTGACTGGTGATATCCGTCATTTAACATGGAACTTGAACCGTACTTCTTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCTGGTAAAAAAGCTCTTAATAACAAGGACTTTCGTCAAGCTATCCAGTTTGCTTTTGACCG
TGCATCATTCCAAGCACAAACTGCAGGGCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTACCACCAACTTTTG
TGTCAATCGGAGAAAATGACTTCGGATCAGAAGTTGAAAAAGACCTTGCTACCATGGGGGATGAGTGGAAAGACGTTAAC
TTAGATGATGCTCAAGATGGATTTTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCATTGACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAAGCCAACGCAGCAACTGTTCAAGAGGCTCAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGTAAAGAAAATGTTGTTGTCAATGTTCTGGAAACAGAAACCTCAACTCACGAA
GCTCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATTATTTCATCATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTGGGAGTTAAAGCTGGTGAAA
GCAAAGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTTTACTTGATGAAGCAGCAGCGATTACAGACGATAAC
GATGCTCGTTACAAAGCTTATGCAAAAGCACAAGCCTACCTTACTGATAGTGCTGTAGATATTCCGGTTGTGGCCTTGGG
TGGTACTCCTCGTGTTTCTAAAGCTATTCCATTTAGCGGTGCCTTTGCCTGGGCAGGAGCTAAAGGACCTGCTTCTGTGT
ATTATTATAAAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATTCGAAAAAGCAAAAGAAAAATGGTTGAAA
GCAAAGGCTAAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.433

100

0.517
  amiA3 Streptococcus thermophilus LMG 18311

50.83

100

0.511
  amiA3 Streptococcus thermophilus LMD-9

50.528

100

0.508