Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GE022_RS01890 Genome accession   NZ_CP053790
Coordinates   360984..362054 (+) Length   356 a.a.
NCBI ID   WP_093999414.1    Uniprot ID   A0AAE4Q7G1
Organism   Streptococcus canis strain HL_77_2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 355984..367054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS01875 (GE022_001870) amiA 356502..358481 (+) 1980 WP_164405048.1 peptide ABC transporter substrate-binding protein Regulator
  GE022_RS01880 (GE022_001875) amiC 358547..360049 (+) 1503 WP_164405049.1 ABC transporter permease Regulator
  GE022_RS01885 (GE022_001880) amiD 360049..360975 (+) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  GE022_RS01890 (GE022_001885) amiE 360984..362054 (+) 1071 WP_093999414.1 ABC transporter ATP-binding protein Regulator
  GE022_RS01895 (GE022_001890) amiF 362047..362970 (+) 924 WP_093999413.1 ATP-binding cassette domain-containing protein Regulator
  GE022_RS01900 (GE022_001895) tnpA 363148..363612 (+) 465 Protein_326 IS200/IS605 family transposase -
  GE022_RS01905 (GE022_001900) - 363949..364903 (-) 955 Protein_327 IS30 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39708.75 Da        Isoelectric Point: 5.6707

>NTDB_id=447205 GE022_RS01890 WP_093999414.1 360984..362054(+) (amiE) [Streptococcus canis strain HL_77_2]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHGKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIIGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPEVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=447205 GE022_RS01890 WP_093999414.1 360984..362054(+) (amiE) [Streptococcus canis strain HL_77_2]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTTGATGTGCGGGATCGTGTTTTAACGGC
GATTCGTAACGTCTCACTGGAACTTGTCGAAGGAGAAGTGCTTGCTTTTGTAGGGGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGAATGTTAGAATCCAATGGACGCATTGCCAATGGTTCTATTGTTTATCGTGGACAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCGAAAATCCGTGGTTCAAAGATTGCGACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATTGGTAGTCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGCCATGGCAAGGCAA
AAGAGATGGCGCTTGATTACATGAATAAAGTAGGAATTCCAAACGCTAAAAAACGTTTTGAAGACTACCCATTTGAATAT
TCAGGAGGAATGCGCCAACGTATTGTTATCGCAATTGCTTTAGCCTGTCGTCCAGATATTCTTATCTGTGATGAGCCTAC
AACAGCCCTTGATGTAACCATTCAAGCTCAAATCATTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATCACACATGACTTAGGTGTTGTCGCAAGTATTGCAGACAAAGTGGCTGTCATGTATGCAGGTGAAATTGTCGAA
TTCGGTACCGTTGAAGAAATTTTCTATGACCCACGCCACCCCTATACGTGGAGTCTATTGTCAAGCTTACCGCAATTAGC
TAATGAATCAGGAGAACTTTATTCCATTCCAGGAACTCCTCCATCGCTTTACTCGCCAATTATCGGAGATGCCTTTGCCC
TTCGCTCAGAATATGCTATGGTCTTGGATTTTGAAGAAACACCACCTGCTATTAGTGTTTCTGATACCCATTGGGCTAAA
ACATGGTTATTACACCCCGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAAGAA
GATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.5

100

0.784
  amiE Streptococcus thermophilus LMG 18311

76.389

100

0.772
  amiE Streptococcus thermophilus LMD-9

76.389

100

0.772
  oppD Streptococcus mutans UA159

57.567

94.663

0.545