Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GE022_RS01895 Genome accession   NZ_CP053790
Coordinates   362047..362970 (+) Length   307 a.a.
NCBI ID   WP_093999413.1    Uniprot ID   A0A3P5XSN6
Organism   Streptococcus canis strain HL_77_2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 363148..364903 362047..362970 flank 178


Gene organization within MGE regions


Location: 362047..364903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS01895 (GE022_001890) amiF 362047..362970 (+) 924 WP_093999413.1 ATP-binding cassette domain-containing protein Regulator
  GE022_RS01900 (GE022_001895) tnpA 363148..363612 (+) 465 Protein_326 IS200/IS605 family transposase -
  GE022_RS01905 (GE022_001900) - 363949..364903 (-) 955 Protein_327 IS30 family transposase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34664.94 Da        Isoelectric Point: 7.1463

>NTDB_id=447206 GE022_RS01895 WP_093999413.1 362047..362970(+) (amiF) [Streptococcus canis strain HL_77_2]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKTMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELVVYNPDQHDYTVDKPSMVEIKPNHFVWANQAEIKKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=447206 GE022_RS01895 WP_093999413.1 362047..362970(+) (amiF) [Streptococcus canis strain HL_77_2]
ATGTCTGAGAAGTTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCGGTTAAGAA
TGCCAATTTCTTCATTAAAAAAGGGGAAACCTTCTCTTTAGTTGGAGAATCTGGTAGCGGAAAAACAACCATTGGTCGGG
CCATTATTGGCTTGAATGATACCAGTTCAGGGCAAATTCTTTACGATGGTAAAGTAATTAATGGTAGAAAATCTAAATCA
GAAGCCAATGAACTTATACGTAAAATTCAAATGATTTTCCAAGATCCTGCTGCTAGTTTAAATGAACGTGCAACTGTTGA
TTATATCATTTCGGAAGGTCTCTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGACGATGA
TGGCTGAAGTTGGCCTGCTGTCAGAGCATCTGACTCGCTACCCACATGAATTTTCGGGAGGTCAACGCCAGCGGATTGGT
ATTGCCAGAGCCTTAGTGATGAATCCTGAATTCGTTATTGCTGATGAGCCTATCTCAGCTTTAGATGTCTCTGTTCGAGC
ACAAGTCCTAAATCTTCTTAAAAGAATGCAGGCAGAAAAAGGGCTCACTTATCTTTTCATCGCCCATGACCTTTCCGTTG
TTCGATTCATTTCAGATCGTATTGCGGTTATTCATAAAGGGGTTATTGTGGAGGTTGCAGAAACAGAAGAATTATTTAAT
AATCCTATCCATCCTTACACAAAATCTCTGCTGTCAGCCGTTCCTATTCCTGATCCGATTTTAGAACGTCAAAAAGAACT
TGTTGTTTATAATCCAGATCAGCATGATTATACCGTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTAAAAAGTATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5XSN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.68

99.674

0.824
  amiF Streptococcus thermophilus LMD-9

82.353

99.674

0.821
  amiF Streptococcus salivarius strain HSISS4

82.353

99.674

0.821