Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GE022_RS01885 Genome accession   NZ_CP053790
Coordinates   360049..360975 (+) Length   308 a.a.
NCBI ID   WP_003046679.1    Uniprot ID   A0AAV3FQG4
Organism   Streptococcus canis strain HL_77_2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 355049..365975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS01875 (GE022_001870) amiA 356502..358481 (+) 1980 WP_164405048.1 peptide ABC transporter substrate-binding protein Regulator
  GE022_RS01880 (GE022_001875) amiC 358547..360049 (+) 1503 WP_164405049.1 ABC transporter permease Regulator
  GE022_RS01885 (GE022_001880) amiD 360049..360975 (+) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  GE022_RS01890 (GE022_001885) amiE 360984..362054 (+) 1071 WP_093999414.1 ABC transporter ATP-binding protein Regulator
  GE022_RS01895 (GE022_001890) amiF 362047..362970 (+) 924 WP_093999413.1 ATP-binding cassette domain-containing protein Regulator
  GE022_RS01900 (GE022_001895) tnpA 363148..363612 (+) 465 Protein_326 IS200/IS605 family transposase -
  GE022_RS01905 (GE022_001900) - 363949..364903 (-) 955 Protein_327 IS30 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34816.83 Da        Isoelectric Point: 9.2024

>NTDB_id=447204 GE022_RS01885 WP_003046679.1 360049..360975(+) (amiD) [Streptococcus canis strain HL_77_2]
METIDKSKFRFVERDSRASEVIDAPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNADYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTVGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=447204 GE022_RS01885 WP_003046679.1 360049..360975(+) (amiD) [Streptococcus canis strain HL_77_2]
ATGGAAACGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTAGAGCCTCCGAAGTAATTGATGCCCCAGCTTA
TTCTTATTGGAAGTCAGTATTCCGTCAATTTTTCTCTAAAAAATCAACGATTTTCATGTTAATGATTTTAGTGACAATTT
TATTGATGAGTTTTATTTACCCAATGTTCGCTAACTATGACTTTGGTGATGTAAGCAATATTAACGACTTTTCAAAACGC
TATATTTGGCCAAATGCTGATTATTGGTTTGGAACAGATAAAAATGGTCAATCCTTATTTGATGGTGTCTGGTATGGTGC
CCGTAACTCTATCTTAATTTCTGTTATTGCAACACTGATTAACGTCACCGTTGGGGTTATTTTAGGTGCTATTTGGGGAG
TCTCCAAAGCATTTGATAAAGTTATGATTGAAATTTATAACGTTATTTCAAATATCCCTTCCATGCTCATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGTTTCTGGAATTTGATTTTAGCTTTCTGTATTACTGGCTGGATTGGTGTTGCCTACTC
CATTCGTGTTCAGATTTTGCGTTACCGTGATTTGGAATATAACCTTGCTAGTCAAACCTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTACCTCAATTGGTTTCAGTTATTATGACCATGTTGTCACAAATGCTACCAGTTTATGTATCC
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACTACCACTCCAAGTCTAGGACGTTTGATTGCTAATTATTC
AAGCAATTTAACAACAAATGCCTACCTCTTCTGGATTCCTTTAGTTACTTTGATTTTAGTATCGTTACCATTGTATATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727