Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GE022_RS01880 Genome accession   NZ_CP053790
Coordinates   358547..360049 (+) Length   500 a.a.
NCBI ID   WP_164405049.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 353547..365049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS01865 (GE022_001860) - 353577..354758 (-) 1182 WP_172758320.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GE022_RS01870 (GE022_001865) pbp3 354933..356171 (-) 1239 WP_164405047.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GE022_RS01875 (GE022_001870) amiA 356502..358481 (+) 1980 WP_164405048.1 peptide ABC transporter substrate-binding protein Regulator
  GE022_RS01880 (GE022_001875) amiC 358547..360049 (+) 1503 WP_164405049.1 ABC transporter permease Regulator
  GE022_RS01885 (GE022_001880) amiD 360049..360975 (+) 927 WP_003046679.1 oligopeptide ABC transporter permease OppC Regulator
  GE022_RS01890 (GE022_001885) amiE 360984..362054 (+) 1071 WP_093999414.1 ABC transporter ATP-binding protein Regulator
  GE022_RS01895 (GE022_001890) amiF 362047..362970 (+) 924 WP_093999413.1 ATP-binding cassette domain-containing protein Regulator
  GE022_RS01900 (GE022_001895) tnpA 363148..363612 (+) 465 Protein_326 IS200/IS605 family transposase -
  GE022_RS01905 (GE022_001900) - 363949..364903 (-) 955 Protein_327 IS30 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56138.35 Da        Isoelectric Point: 10.1038

>NTDB_id=447203 GE022_RS01880 WP_164405049.1 358547..360049(+) (amiC) [Streptococcus canis strain HL_77_2]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKADYENLTFQRMGYINYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPVSKKFYATRHIPIYERVWNFFSNLVVIDHPWKIQDEDNPNLARYI
RLENDKSIGWALVGSGTQHKYLIYANGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASNPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGIPASIILTIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIISLLLG
DIAMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=447203 GE022_RS01880 WP_164405049.1 358547..360049(+) (amiC) [Streptococcus canis strain HL_77_2]
ATGAAAAAATACATCTTAAACCGTATCTTACGATCGTTAGTGTCGGTAGTTTTGGTAACGGCCTTAACATACACCATCGT
ATATACTCTAGTCCCTGTCGGACTTATCTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGACAAAAAGG
CTGATTACGAAAACTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGCAAAGAATTGAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACAACAGAAGCCACTAGTGCTAACAAAGCTATCTATGAGAAATATATTGATTCGCTTGGCAA
TGGTTGGCAGTTAAAACGCTTCCCTGTCAGCAAAAAATTCTATGCTACTCGTCATATTCCTATTTATGAACGTGTTTGGA
ACTTCTTCTCAAACCTAGTTGTTATTGACCACCCTTGGAAGATCCAAGACGAGGACAATCCTAATCTAGCTAGATATATC
CGCCTTGAAAATGATAAATCGATTGGTTGGGCTTTAGTGGGGTCAGGGACACAACACAAATACCTGATCTATGCTAATGG
TAAGTTTCCTTATCTTCACCAAAACTTCGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGTAACATTCCAGTTC
TTCAAGTCATTTCACAAGGACAAGGTCGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTAACTAAGAAATCGTCA
GTGGATATTTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATTACCAAGGTAAATTATGGTAAGGGAGATTC
CTACACTAAAACTATTAATAATTATGTGGATCCTTCAATGATTCATAATTCCTTTGTCATTGGATTCTTTGGCGTTATGT
TTTCTTATATTGTTGGTTTACCACTTGGTTTATTTATGGCTCGCTTTAAAAATACCTACTTTGACCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTGATCTATGTTGTTCGCTTCCTAGGAAGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGAGCATCTAACCCTAAATCATATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACAGTTATCTGGTTCCGTCGCTACCTTGTTGACCTTCAGGCCAGTGACTGGGTGCGTTTTGCGCGCTCAAAAGGG
TTGTCAGAATCTGAAATTTACAGAGGGCATCTCTTTAAAAATGCCATGGTCCCAATTGTGTCAGGGATTCCGGCAAGTAT
TATTCTTACCATCGGTGGAGCAACCTTAACAGAGACTGTCTTTGCTTTCCCGGGTATGGGTAAAATGTTGATTGATTCTA
TTAAATCAGCCAATAACTCAATGATTGTTGGATTAACCTTTATCTTTACCGTCTTGTCAATTATCTCACTCTTACTAGGA
GATATTGCTATGACACTTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.602
  amiC Streptococcus thermophilus LMD-9

59.8

100

0.598
  amiC Streptococcus thermophilus LMG 18311

59.8

100

0.598