Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPC60_RS10695 Genome accession   NZ_CP053671
Coordinates   2131158..2131610 (-) Length   150 a.a.
NCBI ID   WP_023189115.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2126158..2136610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS10640 (HPC60_05385) - 2126359..2126778 (-) 420 WP_179107708.1 dUTP diphosphatase -
  HPC60_RS10645 (HPC60_05390) - 2126775..2127086 (-) 312 WP_023189106.1 hypothetical protein -
  HPC60_RS10650 (HPC60_05395) - 2127083..2127574 (-) 492 WP_179107709.1 DUF1642 domain-containing protein -
  HPC60_RS10655 (HPC60_05400) - 2127567..2127728 (-) 162 WP_223848557.1 DUF1125 domain-containing protein -
  HPC60_RS10660 (HPC60_05405) - 2127901..2128290 (-) 390 WP_023189109.1 YopX family protein -
  HPC60_RS10665 (HPC60_05410) - 2128301..2128663 (-) 363 WP_023189110.1 DUF658 family protein -
  HPC60_RS10670 (HPC60_05415) - 2128638..2128802 (-) 165 WP_010905354.1 hypothetical protein -
  HPC60_RS10675 (HPC60_05420) - 2128913..2129152 (-) 240 WP_025017150.1 DUF1031 family protein -
  HPC60_RS10680 (HPC60_05425) - 2129155..2129529 (-) 375 WP_179107710.1 DUF1064 domain-containing protein -
  HPC60_RS10685 (HPC60_05430) - 2129526..2130251 (-) 726 WP_025017151.1 hypothetical protein -
  HPC60_RS10690 (HPC60_05435) - 2130251..2131033 (-) 783 WP_023189114.1 phage replisome organiser protein -
  HPC60_RS10695 (HPC60_05440) ssb 2131158..2131610 (-) 453 WP_023189115.1 single-stranded DNA-binding protein Machinery gene
  HPC60_RS10700 (HPC60_05445) - 2131610..2132233 (-) 624 WP_023189116.1 DUF1071 domain-containing protein -
  HPC60_RS10705 (HPC60_05450) - 2132242..2132631 (-) 390 WP_023189117.1 hypothetical protein -
  HPC60_RS10710 (HPC60_05455) - 2132730..2132972 (-) 243 WP_023189118.1 hypothetical protein -
  HPC60_RS10715 (HPC60_05460) - 2133080..2133457 (+) 378 WP_025017153.1 DUF2513 domain-containing protein -
  HPC60_RS14200 - 2133450..2133833 (-) 384 WP_023189120.1 hypothetical protein -
  HPC60_RS10725 (HPC60_05470) - 2133926..2134195 (-) 270 WP_014570757.1 hypothetical protein -
  HPC60_RS10730 (HPC60_05475) - 2134208..2134975 (-) 768 WP_023189121.1 phage antirepressor KilAC domain-containing protein -
  HPC60_RS10735 (HPC60_05480) - 2135003..2135314 (-) 312 WP_370501535.1 DUF739 family protein -
  HPC60_RS10740 (HPC60_05490) - 2135382..2136017 (+) 636 WP_190992186.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16698.79 Da        Isoelectric Point: 9.5055

>NTDB_id=446206 HPC60_RS10695 WP_023189115.1 2131158..2131610(-) (ssb) [Lactococcus lactis subsp. lactis strain G121]
MINNVVLVGRLTRDPELRYTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQQAENLAKFAKKGALIGITGRIQTR
NYENQQGQKVYVTEVVADTFQMLESNKTQGQQTSKPQAQNKKLQAPDPFKAPAADPFAGGTEISDDQLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=446206 HPC60_RS10695 WP_023189115.1 2131158..2131610(-) (ssb) [Lactococcus lactis subsp. lactis strain G121]
ATGATTAACAACGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGATATACACCACAGAACCAAGCAGTAGG
CACATTTGGATTAGCTGTAAATCGTCAGTTTAAGAACGCAAATGGAGAGCGAGAAGCTGACTTCATTAATTGTGTTATTT
GGCGACAACAAGCCGAAAATTTAGCCAAATTTGCTAAAAAAGGCGCTTTGATTGGAATAACTGGACGAATTCAAACACGA
AACTATGAGAACCAACAAGGACAAAAAGTTTATGTGACTGAAGTTGTTGCAGATACTTTCCAAATGCTAGAAAGCAATAA
AACACAAGGTCAGCAAACAAGTAAACCGCAAGCTCAAAATAAAAAGCTACAAGCACCAGATCCTTTTAAAGCTCCTGCTG
CTGATCCATTTGCTGGTGGTACTGAAATTTCAGACGACCAACTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.66
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.907

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.615

69.333

0.413
  ssb Neisseria gonorrhoeae MS11

33.721

100

0.387
  ssb Neisseria meningitidis MC58

33.721

100

0.387
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.381

70

0.367
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.429

70

0.36