Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | SYNPCCN_RS02330 | Genome accession | NC_017052 |
| Coordinates | 491174..491539 (+) | Length | 121 a.a. |
| NCBI ID | WP_014407071.1 | Uniprot ID | - |
| Organism | Synechocystis sp. PCC 6803 substr. PCC-N | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 486174..496539
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SYNPCCN_RS02315 (SYNPCCN_0447) | cobT | 486334..487443 (-) | 1110 | WP_010871651.1 | nicotinate mononucleotide-dependent phosphoribosyltransferase CobT | - |
| SYNPCCN_RS02320 (SYNPCCN_0448) | - | 487557..489467 (+) | 1911 | WP_014407070.1 | long-chain fatty acid--CoA ligase | - |
| SYNPCCN_RS02325 (SYNPCCN_0449) | - | 489812..490978 (+) | 1167 | WP_010871653.1 | response regulator | - |
| SYNPCCN_RS02330 (SYNPCCN_0450) | pilH | 491174..491539 (+) | 366 | WP_014407071.1 | response regulator transcription factor | Machinery gene |
| SYNPCCN_RS02335 (SYNPCCN_0451) | - | 491586..492149 (+) | 564 | WP_010871655.1 | chemotaxis protein CheW | - |
| SYNPCCN_RS02340 (SYNPCCN_0452) | pilJ | 492220..494829 (+) | 2610 | WP_010871656.1 | methyl-accepting chemotaxis protein | Machinery gene |
| SYNPCCN_RS02345 (SYNPCCN_0453) | - | 494918..495709 (+) | 792 | WP_010871657.1 | ABC transporter permease | - |
| SYNPCCN_RS02350 (SYNPCCN_0454) | - | 495839..496096 (+) | 258 | WP_041425909.1 | TatA/E family twin arginine-targeting protein translocase | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13674.90 Da Isoelectric Point: 5.8739
>NTDB_id=44483 SYNPCCN_RS02330 WP_014407071.1 491174..491539(+) (pilH) [Synechocystis sp. PCC 6803 substr. PCC-N]
MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIM
CSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLRN
MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEVCRRIKSDPKTKNVPVIM
CSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLRN
Nucleotide
Download Length: 366 bp
>NTDB_id=44483 SYNPCCN_RS02330 WP_014407071.1 491174..491539(+) (pilH) [Synechocystis sp. PCC 6803 substr. PCC-N]
ATGAACGCAGTTTTGCTGGTTGAAGACAGCTCTAGTCAGCGCGAGATGATATCTGGCATCCTCAAAGACCATGGCTGGCA
GGTCACCATCGCCTGTGATGGGGTGGAGGCCCTGGAAAAATTGCAGAATTTTAGTCCGGACCTAGTGGTGCTAGATATTG
TCATGCCCCGCATGAATGGCTATGAGGTTTGTCGACGCATCAAATCCGATCCGAAAACCAAAAATGTGCCAGTGATTATG
TGCTCCTCCAAGGGGGAGGAATTTGACCGTTTTTGGGGCATGCGTCAGGGAGCCGACGCCTACATTGCCAAACCATTTCA
GCCCATGGAACTGGTGGGCACCATCAAACAACTCCTGCGCAATTGA
ATGAACGCAGTTTTGCTGGTTGAAGACAGCTCTAGTCAGCGCGAGATGATATCTGGCATCCTCAAAGACCATGGCTGGCA
GGTCACCATCGCCTGTGATGGGGTGGAGGCCCTGGAAAAATTGCAGAATTTTAGTCCGGACCTAGTGGTGCTAGATATTG
TCATGCCCCGCATGAATGGCTATGAGGTTTGTCGACGCATCAAATCCGATCCGAAAACCAAAAATGTGCCAGTGATTATG
TGCTCCTCCAAGGGGGAGGAATTTGACCGTTTTTGGGGCATGCGTCAGGGAGCCGACGCCTACATTGCCAAACCATTTCA
GCCCATGGAACTGGTGGGCACCATCAAACAACTCCTGCGCAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
100 |
100 |
1 |
| pilG | Acinetobacter baumannii strain A118 |
41.593 |
93.388 |
0.388 |
| chpA | Acinetobacter baumannii strain A118 |
39.655 |
95.868 |
0.38 |
| micA | Streptococcus pneumoniae Cp1015 |
38.333 |
99.174 |
0.38 |
| vicR | Streptococcus mutans UA159 |
38.333 |
99.174 |
0.38 |
| pilL-C | Synechocystis sp. PCC 6803 |
37.5 |
99.174 |
0.372 |