Detailed information NTG0044484

Bioinformatically predicted

Overview

• Name: pilJ
• Type: Machinery gene
• Locus tag: SYNPCCN_RS02340
• Genome accession: NC_017052
• Coordinates: 492220..494829 (+)
• Length: 869 a.a.
• NCBI ID: WP_010871656.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. PCC-N
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 487220..499829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYNPCCN_RS02320 (SYNPCCN_0448)	-	487557..489467 (+)	1911	WP_014407070.1	long-chain fatty acid--CoA ligase	-
SYNPCCN_RS02325 (SYNPCCN_0449)	-	489812..490978 (+)	1167	WP_010871653.1	response regulator	-
SYNPCCN_RS02330 (SYNPCCN_0450)	pilH	491174..491539 (+)	366	WP_014407071.1	response regulator transcription factor	Machinery gene
SYNPCCN_RS02335 (SYNPCCN_0451)	-	491586..492149 (+)	564	WP_010871655.1	chemotaxis protein CheW	-
SYNPCCN_RS02340 (SYNPCCN_0452)	pilJ	492220..494829 (+)	2610	WP_010871656.1	methyl-accepting chemotaxis protein	Machinery gene
SYNPCCN_RS02345 (SYNPCCN_0453)	-	494918..495709 (+)	792	WP_010871657.1	ABC transporter permease	-
SYNPCCN_RS02350 (SYNPCCN_0454)	-	495839..496096 (+)	258	WP_041425909.1	TatA/E family twin arginine-targeting protein translocase	-
SYNPCCN_RS02355 (SYNPCCN_0455)	-	496540..497934 (+)	1395	WP_010871659.1	sensor domain-containing diguanylate cyclase	-
SYNPCCN_RS17300	-	497996..498163 (+)	168	WP_158299069.1	hypothetical protein	-

Sequence

Protein

• Length: 869 a.a.
• Molecular weight: 93209.76 Da
• Isoelectric Point: 4.0166

>NTDB_id=44484 SYNPCCN_RS02340 WP_010871656.1 492220..494829(+) (pilJ) [Synechocystis sp. PCC 6803 substr. PCC-N]
MATETNFSQLYGLAYAAYGQGNYQEASSHIEQLAADFPEDPNVLLLRGHIYVGLEQYALAHQAYQGVIRFSDRQDLIDCA
NQALGQIQEEEPRGNGAKDSLDQDWQSDIDAIDNSMAWETGVFTEEDFGEPTLGRAPSPTNPGMDHPFGRSSASFGTSGA
RSYEIENLDWSPEAFTDDLDSDDEQTMMPQTGESTFVVPPAFGEGIADFADLAADVSSAGIGGTDGAEYPPYQTWDGGDW
SEALGLDDPEALAQAPTPTSGDYGAGNNLPSFDAFEEGVEDELSDFNLTDIAPELPDSSLFSQATNLDIGAVGRIDDTQG
GDTVVHGGNAAPPGMATWLKPDGAATGDLSSATSPFNDRPTSEVDAGFLGWFTNASLFRKQIYMAIASGVFSGFAVLVLG
SIVGLGGTPKDVPAPSGETTTEAPAEGAPAEGQAPSQTPEEEPGKPSLLNLAFLTAIATAIGVFLINRLLMQQIKSIIDD
LQNQFESIYEGNFNVRAKVRSEDELGALTQRFNYISQVILTATSEAQERAATTEKVREKLQRQVIRLLDDVEGASRGDLT
VQAEVTADELGAVADAFNLTIQNLREIVLQVKNAAKQVNNNCKDSESFARNNSSDALRMAEELAVTLNSVQLMTESIERV
AENAREAEEVAHTSSLTALKGGEAVERTVGGILQIRETVSETARKVKRLAEASQEISKIVAVISQIASRTNLLALNASIQ
AARAGEAGRGFAIVADEVRQLADRSAKSLKEIEQIVLQIQSETGSVMTAMEEGIQQVIDVTDKSEQSKRALEDIIEVSNR
INTLVRSITADTVKQQENSGAVSNVMQSIELTAQETSQESQRVAGSLQTLVSISRDLLTSVERFRVESR

Nucleotide

• Length: 2610 bp

>NTDB_id=44484 SYNPCCN_RS02340 WP_010871656.1 492220..494829(+) (pilJ) [Synechocystis sp. PCC 6803 substr. PCC-N]
ATGGCAACAGAAACCAATTTTTCGCAGCTTTATGGGTTGGCCTACGCCGCCTATGGACAGGGGAATTATCAAGAAGCTTC
TTCCCATATTGAACAATTGGCCGCTGATTTTCCCGAAGATCCTAATGTATTGTTGCTCCGGGGGCATATCTATGTCGGCC
TGGAACAATACGCCCTAGCCCACCAGGCTTATCAGGGGGTAATTCGGTTTTCCGATCGCCAAGACTTAATTGACTGCGCT
AACCAGGCCCTAGGGCAAATCCAAGAAGAGGAACCAAGGGGCAACGGAGCCAAAGATTCCCTTGACCAGGATTGGCAAAG
TGACATCGATGCCATTGACAATTCCATGGCCTGGGAAACAGGAGTGTTCACCGAAGAGGATTTCGGCGAGCCCACTTTGG
GCCGGGCCCCCAGCCCCACTAATCCGGGCATGGACCATCCCTTTGGCCGCAGCTCTGCTTCCTTTGGTACCAGTGGGGCC
AGGAGTTACGAAATTGAAAACCTAGATTGGAGTCCGGAAGCTTTCACCGATGACCTGGACTCCGATGATGAACAGACCAT
GATGCCCCAAACTGGCGAGTCTACTTTTGTGGTGCCACCGGCCTTTGGTGAAGGGATAGCGGATTTTGCCGATTTAGCGG
CGGATGTCTCCTCAGCCGGCATTGGCGGGACAGATGGTGCCGAATATCCCCCATATCAAACTTGGGACGGGGGCGACTGG
AGTGAAGCTCTCGGTTTGGATGATCCTGAAGCCTTGGCTCAGGCCCCTACCCCCACCTCTGGCGATTACGGCGCTGGCAA
TAACCTACCGAGTTTTGATGCGTTTGAGGAAGGGGTGGAGGATGAGTTGTCCGATTTTAACCTGACGGATATTGCCCCAG
AGTTGCCCGATTCTTCCCTCTTTAGCCAAGCCACTAATTTGGACATAGGTGCGGTGGGTCGCATCGATGACACCCAGGGC
GGTGATACGGTGGTCCATGGAGGTAATGCAGCGCCACCGGGCATGGCCACTTGGTTGAAACCGGATGGGGCCGCCACCGG
GGATTTATCCAGCGCCACTAGTCCCTTTAATGACCGGCCCACCAGTGAGGTAGATGCGGGTTTTCTCGGTTGGTTCACCA
ATGCTTCCCTGTTTAGAAAGCAGATTTACATGGCGATCGCCTCCGGTGTGTTTTCCGGGTTCGCGGTGTTGGTATTGGGA
AGCATAGTGGGTTTAGGGGGAACTCCCAAAGACGTACCTGCTCCTTCAGGGGAAACCACCACCGAAGCTCCAGCAGAAGG
TGCCCCCGCAGAGGGCCAGGCCCCTTCCCAGACCCCAGAGGAAGAACCGGGCAAACCATCCCTCCTCAACCTCGCCTTCC
TCACAGCCATAGCCACGGCGATCGGAGTCTTTCTGATCAATCGATTGCTGATGCAACAGATTAAGAGTATTATCGACGAC
CTGCAAAATCAGTTTGAATCCATCTATGAGGGCAATTTCAATGTCCGGGCCAAGGTGCGATCGGAGGATGAATTGGGGGC
TTTGACCCAACGGTTTAACTATATTTCCCAAGTTATTCTCACGGCCACTAGTGAAGCCCAGGAACGGGCTGCTACCACCG
AAAAAGTGCGGGAAAAATTACAGCGCCAAGTAATTCGGCTCCTGGACGATGTAGAGGGAGCTTCCCGGGGAGATTTAACC
GTACAAGCGGAAGTAACGGCGGATGAGCTGGGAGCGGTGGCCGATGCCTTTAACCTAACTATCCAAAACCTGCGGGAGAT
TGTGTTACAAGTTAAAAATGCCGCCAAGCAGGTGAATAACAACTGTAAAGACAGTGAGTCCTTTGCCCGCAATAACTCCA
GCGATGCGTTGCGAATGGCGGAGGAATTGGCCGTCACCCTCAACTCTGTTCAGTTAATGACGGAATCCATTGAACGGGTA
GCAGAAAACGCCCGGGAAGCGGAGGAAGTGGCCCATACTTCATCTTTAACTGCCCTCAAAGGTGGGGAAGCGGTGGAAAG
AACGGTGGGGGGCATTCTGCAAATTCGGGAAACGGTGTCGGAAACTGCCCGCAAGGTAAAACGGTTAGCGGAAGCATCCC
AGGAAATTTCCAAAATTGTGGCGGTTATTTCCCAAATTGCCTCCCGGACTAACCTGTTAGCTTTGAACGCCTCCATCCAG
GCGGCCCGGGCAGGGGAAGCAGGGCGGGGCTTTGCCATCGTTGCAGACGAGGTGCGACAGTTGGCGGATCGTTCTGCTAA
GTCGTTGAAGGAAATTGAGCAAATCGTTTTGCAAATTCAGAGTGAAACCGGCTCCGTAATGACCGCCATGGAAGAAGGTA
TCCAACAGGTAATCGACGTAACTGACAAGTCGGAACAGTCGAAACGGGCCCTGGAGGATATTATTGAGGTGTCTAATCGG
ATTAACACTTTGGTGCGTTCCATTACTGCTGATACCGTCAAGCAGCAGGAGAACTCCGGTGCAGTGTCCAACGTCATGCA
GTCCATTGAGCTGACGGCCCAGGAAACTTCCCAGGAATCTCAACGGGTAGCAGGATCTTTGCAAACCCTGGTCTCCATTT
CCCGCGACCTGTTAACTTCGGTGGAACGGTTCCGGGTGGAAAGTCGCTAG

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (555-586)

• HAMP domain (HAMP) (473-514)

• Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal) (649-830)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilJ	Synechocystis sp. PCC 6803	100	100	1